Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0829 ATGGACGGCGGCGCCGGGAAGTTGAAGGCGGCGAATTCGAGCAATGGAAGTAGGACACGTGTTGGAAAATATGAATTGGGTCGAACCCTAGGGGAGGGGAATTTCGCTAAGGTGAAATTTGCTCGGAATTCGGAGACTGGTGAGAATGTGGCGATTAAGATTCTCGATAAGGAGAAAGTTCTTAAGCATAAGATGATTGCTCAGATTAAACGTGAGATATCGACTATGAAATTGATTAGACATCCAAATGTCATTCGTATGTTTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTCTTGGAGTTTGTCACTGGTGGGGAACTATTTGATAAAATTGTTAGTAGAGGGAGGATGAAAGAAGATGAAGTAAGAAAGTATTTTCAACAGCTTATTAATGCTGTAGATTACTGTCATAGCAGAGGTGTTTTTCATAGAGACCTAAAGCCAGAGAATTTGCTGCTTGATGCAAATGGCGTTCTTAAAGTTTCAGATTTTGGATTGAGTGCGCTACCTCAGCAAGTCCGAGAAGATGGGTTACTCCACACAACATGCGGAACACCAAATTATGTTGCTCCCGAGGTGATCAACAACAAAGGCTATGATGGAGCTAAGGCAGACTTGTGGTCATGTGGTGTAATTCTGTTTGTCTTGATGGCTGGTTATTTACCTTTTGAAGATTCCAATCTTGTTGTCCTGTATAAGAAGATACACAAGGCTGACTTCACGTGTCCACCATGGTTTTCTGCAAACGCTAAGAAACTAATCAAAAGAATTTTGGACCCCAATCCCTCAACGAGGATTACCATTGCAGAGGTCATTGACAATGAGTGGTTCAAAAAAGGATATAAGCCACCTACTTTTGAACAAGCTGATATTAGTCTTGATGATGTAGATGCTATCTTCAATGAAATAGGGGATTCTGTTAATCTCGTTGTGGAAAGGAGAGAGGAAGGACCAGCTGCTCGTACCATGAATGCATTTGAGCTCATCTCCAAATCTCAAGGCCTCAACCTCAATTCTCTTTTTGAGAAACAAATGGGGATTGTTAAAAGGGAAACAAGGTTCACATCCAATCGACCTGCTAAAGAGATCCTTTCGAAAATTGAGGAAACTGCAGCGCCATTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAGGGCGAAAAAACAGGTCGTAAAGGCCATTTATCTGTTGCAACAGAGATTTATGAGGTGGCTCCGTCACTATACATGGTTGAGCTCCGCAAAGCTGGAGGAGATACATTAGAATTTCATAAGTTTTATAAGAACCTCAAGACCGGGCTGAAAGATATTGTTTGGAAACATGAAGAAGATGCAGAGGGAGAAAATATAGGTGCAGGTGCAGGTGCAAGTGTCTCACATTCAAGTTCTGCGGGAGCATCGTCGCCTGCGGTTCCGACGAATATTGGAAGTGTTGATGGGTCTATTCGTGGGCTTGGGTCCAAAGCTGCTTCTTTATCTTGTGTTGGTTCGCAACCACCTCAGCCTTCCTTCAGTACTGGTGTTGGAGGGTCTGCTTTTGGAATGTCGAGATATTCCTGTCGACCGTGGGAAAGAGGGGATTTACTTAGGCGTTTGGCTACCTTCAAACCTGGAAATTGGTTTGGAAAACCTAAGGCAGTTAGTTCGCTTGCTTGTGCACAGAGAGGTTGGATGAATGTTGATGTTGATAAGATTGAATGTGAATCTTGTGGTGCCATTACAAGCTTTGAATTACTACAGTCATGGACATCTGCAGAAGTTCAACTTGCTGAGTTTACAAAGCAGCTGGATTCTGGGCACAAGATCTCTTGTCCTTGGAGAGGAAATAGCTGCCCTGAAAGTTTGGTGCAGTTCCCTCCAACTCCTCAGTCTGCTTTAGTTGGAGGATTTAAAGATAGATGTGATGGACTTCTGCAGTTTCAGTCCCTTCCTGCTATAGCTGCTTCTGCAATTGAACAAATGCGTGTTTCTAGGAGTGCTCAGGTTGATCGCCTTCTATCTCAATCACCAAATTTCACAGTGGGTGAAGTAGGCTCTCAAGATGGAACAATCTATTTGTATTCTCAAGCACAGAAAATTATTAGCCTTTGTGGATGGGAACCAAGATGGCATTTAGATGTTCAAGATTGTGAAGAGCATTCTGCACAGTCAGCTCAAAATGGATGTTCTTTTGGTCCCACAGAGGCTCAGTTGCATCTTTCCCATGATGCTGCTCGAAGCAAGAAAGCCCTCTCTACTTCAATAAAAAAAGACACTGGAAAGGGTAAACTACTGGTCAAGGACTCTAGAAGCGAATTAAGATCACCTGTGCTAGATTGTAGCATATGTGGTGCTACCGTTAGGATATTTGAATTCTTAACTATTTCCCGACCTGCTCATTTTGCTCCTATCAACATTGATATACCTTCTACGAGTAAGAAAATGGGATTGACACGTGGAGTAAGTGCAGCTAGTGGAATTAATGGATGGGTGACCGCCGATGATGTAGAGAAAGAACGTATTGAAGACCGTGATGAAGTAGCAACAACAAATGAGGCAAGCTTACTGCCAAACACTGAGGTTGATTTGAATCTGACAATGGCAGGAGGCTTAGATGTTTCTCAGTTGGAAAGGAATGCAGACATTGATAATATTCCCAATGGGGATCTGGGAAGGGACCTAATGATTGGGCAACCATCAGGCAGTGAGGTTGGTGATCGTGCTGCTTCATATGAATCAAGAGGTCCTAGCTCGCGTAAACGGAGCTTGGATAAGGATGGCAGTTCTGATGACAGGGCACAATTAAGGATGCATCAAGCTGATAGTGTGGAAGGAACTGTCATAGACCGTGATGGTGATGAAGTCACAGATGACAGACAATATTCAGCCGGACCTTCAAAACGAACTCGTGATTCTGAATTTTTTGATACATACTGTTCTTACCAAAGAGATTCAGCTGGTGCTGGTCCAAGTCATTCAATGGGTTTAGACCTTTGCTTGGATGGAGAAAGATTTACTTCATTCCAGCAAGGAGGTGACCAATTTACTGGAATTCAATCTACTAGGGATTCGACTCGGGCATCATCTGTTATTGCGATGGACACAATGTGTCACAGTGCTAATGACGATTCTATGGAAAGTGTTGAAAATTTTCCTGGTGATGTTGATGATGTTCATTTGCCTTCTTCAAGTACACATGGGAATTTAGACATCAATGAAACATCGGAATTGATATATAGTAATCAAGCTCAGCAGAGCATTTTTCTTCGACCAGCTTCTGAAGTACCTGGTGAAATGGGTGTCAGTAGTACGAATGATGGTGAAGAAATATTCAATGCTGATACTGTCACTACTCAGGCAAGGGATGTGTTCAGTTTTGGAATTAGTGGTGGAAGTGTTGGAATGTGTGCAAGTCATGAGGCTGAAATTCATGGGGCTGATGTATCAGTTCATAGGGCAGATAGTGTTGTTGGTGATATCGAACCCAGGGTGGAGGATACAGAAAACCAGGGACAAACTGGTGAATCTGCTCCTGATCCTGGACTAATGGACGAGATTGTTCCTGATGACATCATCAGAGAAGACCCTCATGGTGATAGCCAGGAGATGTTTTCTCGGTCTGTAGAAAGAGCTGATAGTGGATCAAAAGTTGATGGTTCTGCTAAAGATGACTCAGTTGAAAGTGGTGGAAAGACAAGTCGAAGCTGTAAGATAGCCTTAGGGAATAGCTGCCACAATGTTGATGCGCACCCTACTCGTGGAAAAAATAAGACTGAGGATACTAATGCTGAGCCTCAAAAAGGGGAAAGCAATTATGAAATGGAATTTGACCCGATAGTCCACCACAACCAGTTTTGCCCTTGGGTAAACGGAAATGTTGCTGCTGCTGGCTGTACGAGTGGTGGTTCCAGCTCCAGTGCAGATACAGTTGCTCTTAATGGATGGCAGCTGACGTTAGACGCACTCGATGCTTTGCAATCCCTTGGGCGTACAGAAGTTCAGACTTTACAATCTGAGTCAGCAGCATCTCTTTATAAGGATAATCATCATGGTAAAGAACTTCTTCGTCAACACTCGGCAAGCAGAAGCCACGGGAAACCTTAA 4098 43.09 MDGGAGKLKAANSSNGSRTRVGKYELGRTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMIAQIKREISTMKLIRHPNVIRMFEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDEVRKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVVLYKKIHKADFTCPPWFSANAKKLIKRILDPNPSTRITIAEVIDNEWFKKGYKPPTFEQADISLDDVDAIFNEIGDSVNLVVERREEGPAARTMNAFELISKSQGLNLNSLFEKQMGIVKRETRFTSNRPAKEILSKIEETAAPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKNLKTGLKDIVWKHEEDAEGENIGAGAGASVSHSSSAGASSPAVPTNIGSVDGSIRGLGSKAASLSCVGSQPPQPSFSTGVGGSAFGMSRYSCRPWERGDLLRRLATFKPGNWFGKPKAVSSLACAQRGWMNVDVDKIECESCGAITSFELLQSWTSAEVQLAEFTKQLDSGHKISCPWRGNSCPESLVQFPPTPQSALVGGFKDRCDGLLQFQSLPAIAASAIEQMRVSRSAQVDRLLSQSPNFTVGEVGSQDGTIYLYSQAQKIISLCGWEPRWHLDVQDCEEHSAQSAQNGCSFGPTEAQLHLSHDAARSKKALSTSIKKDTGKGKLLVKDSRSELRSPVLDCSICGATVRIFEFLTISRPAHFAPINIDIPSTSKKMGLTRGVSAASGINGWVTADDVEKERIEDRDEVATTNEASLLPNTEVDLNLTMAGGLDVSQLERNADIDNIPNGDLGRDLMIGQPSGSEVGDRAASYESRGPSSRKRSLDKDGSSDDRAQLRMHQADSVEGTVIDRDGDEVTDDRQYSAGPSKRTRDSEFFDTYCSYQRDSAGAGPSHSMGLDLCLDGERFTSFQQGGDQFTGIQSTRDSTRASSVIAMDTMCHSANDDSMESVENFPGDVDDVHLPSSSTHGNLDINETSELIYSNQAQQSIFLRPASEVPGEMGVSSTNDGEEIFNADTVTTQARDVFSFGISGGSVGMCASHEAEIHGADVSVHRADSVVGDIEPRVEDTENQGQTGESAPDPGLMDEIVPDDIIREDPHGDSQEMFSRSVERADSGSKVDGSAKDDSVESGGKTSRSCKIALGNSCHNVDAHPTRGKNKTEDTNAEPQKGESNYEMEFDPIVHHNQFCPWVNGNVAAAGCTSGGSSSSADTVALNGWQLTLDALDALQSLGRTEVQTLQSESAASLYKDNHHGKELLRQHSASRSHGKP 1365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6240969 6270558 + evm.model.ptg000005l.688 HCH3g0829 541557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0829 1365 SUPERFAMILY Protein kinase-like (PK-like) 21 280 IPR011009 -
HCH3g0829 1365 MobiDBLite consensus disorder prediction 460 477 - -
HCH3g0829 1365 CDD STKc_SnRK3 23 278 - -
HCH3g0829 1365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0829 1365 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0829 1365 ProSiteProfiles NAF domain profile. 320 344 IPR018451 GO:0007165(InterPro)
HCH3g0829 1365 Gene3D Kinase associated domain 1, KA1 320 445 - -
HCH3g0829 1365 FunFam Non-specific serine/threonine protein kinase 15 103 - -
HCH3g0829 1365 MobiDBLite consensus disorder prediction 455 477 - -
HCH3g0829 1365 Pfam NAF domain 324 382 IPR004041 GO:0007165(InterPro)
HCH3g0829 1365 MobiDBLite consensus disorder prediction 1341 1365 - -
HCH3g0829 1365 FunFam Non-specific serine/threonine protein kinase 317 445 - -
HCH3g0829 1365 CDD CIPK_C 326 441 - -
HCH3g0829 1365 FunFam Non-specific serine/threonine protein kinase 17 319 - -
HCH3g0829 1365 SMART serkin_6 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0829 1365 MobiDBLite consensus disorder prediction 881 968 - -
HCH3g0829 1365 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0829 1365 Pfam C3HC zinc finger-like 527 649 IPR012935 GO:0008270(InterPro)
HCH3g0829 1365 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
HCH3g0829 1365 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
HCH3g0829 1365 MobiDBLite consensus disorder prediction 911 968 - -
HCH3g0829 1365 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524(InterPro)
HCH3g0829 1365 MobiDBLite consensus disorder prediction 1157 1267 - -
HCH3g0829 1365 PANTHER NUCLEAR-INTERACTING PARTNER OF ALK 465 1363 - GO:0005634(PANTHER)
HCH3g0829 1365 MobiDBLite consensus disorder prediction 1343 1358 - -
HCH3g0829 1365 MobiDBLite consensus disorder prediction 1184 1228 - -
HCH3g0829 1365 MobiDBLite consensus disorder prediction 1248 1267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1466 HCH-Chr2:56197623 HCH3g0829 HCH-Chr3:6240969 5.60E-179 dispersed
HCH3g0829 HCH-Chr3:6240969 HCH7g1747 HCH-Chr7:49176292 1.30E-181 dispersed
HCH7g1337 HCH-Chr7:46252891 HCH3g0829 HCH-Chr3:6240969 4.30E-12 dispersed
HCH13g1002 HCH-Chr13:24972969 HCH3g0829 HCH-Chr3:6240969 2.30E-46 transposed
HCH3g0153 HCH-Chr3:980867 HCH3g0829 HCH-Chr3:6240969 4.00E-49 transposed
HCH14g1094 HCH-Chr14:37877312 HCH3g0829 HCH-Chr3:6240969 4.70E-221 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81418 PF00069 Pkinase 1.20E-73 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0829 - - - 0.0