Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0834 ATGAGAATGAGGCTGTCTACTGCTGGTTTTAGTCCTCAAGCTCAGGAAGGTGAGAAGAGGGTTCTGAATTCTGAGCTTTGGCATGCCTGTGCTGGTCCTCTCGTTTCGCTACCGTCTGTTGGCAGTCGTGTTGTTTATTTTCCTCAAGGCCATAGTGAGCAGGTTACTGCATCGACCAATAAAGAGGCCGATGCCCAGATCCCAAACTACCCCAGTTTGCCACCACAACTCATCTGTCAACTTCACAACCTCACTATGCATGCAGATGCTGAGACAGATGAAGTCTATGCTCAGATGACTCTACAACCCTTAAGTCCTCAAGAACTTAAGGAAGCCTACCTTCCAGCTGAGTTAGGCACTCCAAGTAGGCAGCCAACAAATTACTTCTGCAAAACCTTGACAGCCAGTGACACCAGCACTCATGGAGGTTTTTCTGTTCCTCGCCGTGCCGCTGAAAAAGTGTTCCCTCCTTTGGACTTCTCCATGCAACCCCCAGCTCAAGAGCTGGTTGCGAGGGACCTGCATGATAATGAATGGAAATTTAGACATATATTTCGTGGCCAGCCAAAAAGGCACCTCCTTACAACTGGATGGAGTGTATTCGTGAGTGCTAAAAGACTTGTTGCTGGTGATGCTGTACTTTTTATCTGGAATGAAAAAAACCAATTGCTCCTTGGAATTAGGCGTGCCACTCGACCGCAAACCGTGATGCCTTCATCAGTTTTATCAAGTGATAGCATGCATTTAGGGCTTCTTGCTGCAGCAGCTCATGCAGCTGCAACAAATAGTCGGTTTACTATATTTTTTAACCCAAGGGCTAGCCCGTCAGAGTTTGTCATACCACTGGCCAAATATGTAAAGGCAGTCTACCATACTCGTGTTTCTGTTGGTATGCGCTTTAGGATGCTGTTTGAAACAGAAGAATCAAGTGTCCGTCGCTATATGGGTACAATCACTGGCATCTGTGACTTGGATCCTGTTAGATGGCCGAATTCACATTGGCGCTCGGTCAAGGTTGGCTGGGATGAGTCAACCGCAGGAGAGCGTCAGCCAAGAGTGTCCCTATGGGAGATTGAGCCATTGACAACATTTCCAATGTATCCATCACCATTTCCCCTAAGGCTGAAGCGGCCGTGGCCAGCTGGATTGCCCTCTTTCCATGGCATCAAGGATAATGATCTTGGAATGAATTCGCCCTTCATGTGGTTACGGGGAGATAATGGAGATCGTGGCGTCCAGTGCCTTAACTTCCAGGGAACTGGGGTCACACCATGGATGCAGCCTAGGCTTGATACTTCCATGATTGGTATGCAATCTGACATGTATCAAGCCATGGCTGCTGCAGCACTTCAGGAGATGAGAGCAGTAGATTATTCCAAAATTACACCTGCATCTCTTTTGCAATTCCAGCAGCCTCAAGGTCTTCCTTGTCAGTCTTCTACCTTGATGCAGCCTCAGATGTTTCATCAGTCTCAACCTCAGCAGGCTTTTCTACAATCCGTTCAAGATAACCAGCAACATTCTCAGTCCCAGTCTCAAACTCAGCCACACCATCTTCAGCAACAATTGCAGCCTCAACAGTCCTTGAATAATCAACAACAGCACCATCAGCAGCAAACAAGGCAGCCACAGCCACAGCCGCAGCCACTGGTTGATCATCAACAGATTCCTTGTACGATCTCCGCTATATCTCAGTTTGCTTCATGTTCTCAGTCCCAGTCAGCATCCCTGCAAACTGTCCCTTCCCTTTGCCATCAGCCAAGTTTTTCTGATTCCAATGGTAACCCTGTAACCAGTCCTACTGTTTCCCCATTGCATAGCCTTGCAGGGTCATTTGTCCAAGATGAATCATCTCAGCTGCTCAACCTCCCGAGAACAAACTCACTAATTCCTTCAGCAAGCTGGCCGTCGAAGAGAGCTGCAATCGATCCTCTCTCAACTGGACCTTCTCAGTTTTATCTACCTCAAGTAGAAAATTTGGGAACATCTCACAGTAGTATTTCTCAGAATACAGTTGCACTGCCACCCTTTCCTGGAAGAGAATGCTCTATTGATCGAGAAGAGGGCAATGATCCACACAACCATGTTTTATTTGGTGTGAATATAGAGCCTTCATCTCTTCTAATGCATAATGCAATGTCAAACCTTAGGGGAGTAGGCAATGATAGTGTTTCAACAACTCTACCCTTTTCTTCTAATTACATGAGTACTGCCGGTACTGATTTTTCTGTAAATCCGACAATGACGACTTCAAACTGCATTGATGAATCGGGTTTCCTGCAGTCTCATGAAAATGTGGGTCAAGTAAACCCACAAAATGGAACCTTTGTCAAGGTTTACAAATCAGGATCCTACGGTAGGTCGCTAGATATAACAAAATTCAATAGCTATCCCGAGCTACGCAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCGAATTGGAGGATCCTCTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAACGATGTTCTTCTCCTTGGGGATGGCCCCTGGCCGGAGTTTGTGAACAGCGTGTGGTGTATTAAAATACTTTCACCACAAGAAGTTCAAGAAATGGGAAAACAAGGTTTAGAACTCCTGAACTCCGTGCCAATCCAGCGGCTCTCCAATAGCACTTGTGATGACTATGGTAGCCGACAGGACTCGAGAAATTTGATATCAGGGATAACCTCCGTTGGATCTCTGGACTACTGA 2724 46.66 MRMRLSTAGFSPQAQEGEKRVLNSELWHACAGPLVSLPSVGSRVVYFPQGHSEQVTASTNKEADAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSPQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELVARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPAGLPSFHGIKDNDLGMNSPFMWLRGDNGDRGVQCLNFQGTGVTPWMQPRLDTSMIGMQSDMYQAMAAAALQEMRAVDYSKITPASLLQFQQPQGLPCQSSTLMQPQMFHQSQPQQAFLQSVQDNQQHSQSQSQTQPHHLQQQLQPQQSLNNQQQHHQQQTRQPQPQPQPLVDHQQIPCTISAISQFASCSQSQSASLQTVPSLCHQPSFSDSNGNPVTSPTVSPLHSLAGSFVQDESSQLLNLPRTNSLIPSASWPSKRAAIDPLSTGPSQFYLPQVENLGTSHSSISQNTVALPPFPGRECSIDREEGNDPHNHVLFGVNIEPSSLLMHNAMSNLRGVGNDSVSTTLPFSSNYMSTAGTDFSVNPTMTTSNCIDESGFLQSHENVGQVNPQNGTFVKVYKSGSYGRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQEMGKQGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGITSVGSLDY 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6324251 6329986 - evm.model.ptg000005l.683 HCH3g0834 541562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0834 907 Gene3D - 127 231 IPR015300 -
HCH3g0834 907 Pfam AUX/IAA family 765 860 IPR033389 -
HCH3g0834 907 ProSiteProfiles PB1 domain profile. 774 858 IPR053793 -
HCH3g0834 907 FunFam Auxin response factor 127 231 - -
HCH3g0834 907 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677(InterPro)
HCH3g0834 907 Gene3D - 771 863 - -
HCH3g0834 907 SUPERFAMILY CAD & PB1 domains 764 849 - -
HCH3g0834 907 Gene3D - 293 365 - -
HCH3g0834 907 SMART B3_2 129 231 IPR003340 GO:0003677(InterPro)
HCH3g0834 907 Pfam Auxin response factor 255 337 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH3g0834 907 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677(InterPro)
HCH3g0834 907 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
HCH3g0834 907 MobiDBLite consensus disorder prediction 488 551 - -
HCH3g0834 907 FunFam Auxin response factor 293 365 - -
HCH3g0834 907 CDD B3_DNA 128 229 IPR003340 GO:0003677(InterPro)
HCH3g0834 907 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 866 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH3g0834 907 FunFam Auxin response factor 769 863 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1097 HCH-Chr10:39547104 HCH3g0834 HCH-Chr3:6324251 1.80E-263 dispersed
HCH2g1183 HCH-Chr2:54337450 HCH3g0834 HCH-Chr3:6324251 1.90E-72 dispersed
HCH3g0834 HCH-Chr3:6324251 HCH5g0663 HCH-Chr5:4792412 4.80E-100 dispersed
HCH10g0205 HCH-Chr10:1652740 HCH3g0834 HCH-Chr3:6324251 3.70E-163 transposed
HCH10g0582 HCH-Chr10:4660903 HCH3g0834 HCH-Chr3:6324251 1.80E-168 transposed
HCH12g0140 HCH-Chr12:763691 HCH3g0834 HCH-Chr3:6324251 2.40E-171 transposed
HCH14g0950 HCH-Chr14:37009119 HCH3g0834 HCH-Chr3:6324251 5.50E-99 transposed
HCH2g1164 HCH-Chr2:54214162 HCH3g0834 HCH-Chr3:6324251 8.20E-104 transposed
HCH8g1520 HCH-Chr8:49320730 HCH3g0834 HCH-Chr3:6324251 1.60E-110 transposed
HCH14g1100 HCH-Chr14:37927991 HCH3g0834 HCH-Chr3:6324251 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33345 PF02309 AUX_IAA 2.70E-08 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0834 K14486 - csv:101211705 1511.51