Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0840 ATGTTAGAAGAACTTCCTCGACCATCAGGTAATTCAACTCAAACTTCTATGAGCAGTGAAAGTTGCAGTAGTTTCAGCCGTCTCTCATTCGACGCCGCCATCGATTTCCCGACGTCACCCGATAATAACAATAATAATCTTGAACTAAAACCACACCGCTCCTCCGACTTCGCCTACTCAGCCATACGTCGTCGTAAGAACAAACTCACGTTCCGTGACTTCCGTCTTCTCCGACGTATCGGCTCGGGTGATATCGGGACTGTTTATCTTTGTCATCTGAGAAGTTCAGGCAATGGAGGTTGCTTTAACGATGAAGAAGAAGTAGAAGATGATAATGATAATGATGACGTTAATAATAATGATAAAAGTTCGTGTTTTTATGCGATGAAAGTCGTGGATAAGGAAGCTTTGGAATTGAAGAAGAAAGTTGAAAGAGCGGAAATGGAAAGGAAGATATTGAAGATGCTTGATCATCCGTTTTTGCCTACGCTTTACGCTGAGTTTGAAGCTTCTCATTTCTCTTGTATTGTTATGGAGTTTTGCTCTGGTGGAGATTTGCATTCTCTTAGACATAAACAGCCTCTTAAACGCTTCTCTCTCTCTTCTGCAAGATTTTATGCAGCGGAAGTTCTCGTAGCATTAGAATACCTTCACATGTTAGGAATCATCTACAGAGACCTAAAACCCGAGAATGTACTAGTCAGATCAGACGGTCACATCATGCTCTCAGATTTCGATCTCTCTCTATGCTCAAACGCAATCCCAGCCGTTGAATCACCTCCATACAACGCCACGTCATACCCCAAACCCAGCATTCACACTATTCCCACGCCTTTCTCATGTCTCTACAAGAGACTCTTCAATCACCGTTCTCGAAAAGTCCAAACCCTAAGTTCAAACTGGCTCTTCGTGGCCGAGCCCGTATCGGCTCGGTCTTGCTCTTTCGTCGGAACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGTGGGTCCCACGGCAACGCAGTTGATTGGTGGGCTTTTGGTGTTTTTCTCTACGAACTTATCTACGGCCGCACGCCGTTTGCGGCGGCCACGAATGACAGCATCCTCCGTAACATCATTAAAAACCCGTTGACGTTTTCGACACCGACGTGTTCCTCCACGCTTGAGCATCACGCGCGCGACCTCATTTCAGGGTTGTTGAATAAAGACCCGACCCGTCGGCTCGGGTCGAAGCGGGGATCTGCTGATGTTAAGAAGCATGCTTTCTTCAAGGGCCTCAATTTCGCTCTCGTACGCTCGCTTACGCCGCCGGAGATTCCCGGCGTGAGGCGGCGTAGGACGGCGGCGGGAGGATTTGATTTCTTCTAA 1353 47.67 MLEELPRPSGNSTQTSMSSESCSSFSRLSFDAAIDFPTSPDNNNNNLELKPHRSSDFAYSAIRRRKNKLTFRDFRLLRRIGSGDIGTVYLCHLRSSGNGGCFNDEEEVEDDNDNDDVNNNDKSSCFYAMKVVDKEALELKKKVERAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPLKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSNAIPAVESPPYNATSYPKPSIHTIPTPFSCLYKRLFNHRSRKVQTLSSNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIYGRTPFAAATNDSILRNIIKNPLTFSTPTCSSTLEHHARDLISGLLNKDPTRRLGSKRGSADVKKHAFFKGLNFALVRSLTPPEIPGVRRRRTAAGGFDFF 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6493464 6495098 - evm.model.ptg000005l.677 HCH3g0840 541568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0840 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g0840 450 Gene3D Transferase(Phosphotransferase) domain 1 312 436 - -
HCH3g0840 450 ProSiteProfiles Protein kinase domain profile. 74 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0840 450 PANTHER FLIPPASE KINASE 1-RELATED 31 437 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH3g0840 450 Pfam Protein kinase domain 121 248 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0840 450 Pfam Protein kinase domain 312 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0840 450 FunFam protein kinase PINOID 181 249 - -
HCH3g0840 450 SMART serkin_6 74 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0840 450 Coils Coil 129 156 - -
HCH3g0840 450 SUPERFAMILY Protein kinase-like (PK-like) 53 433 IPR011009 -
HCH3g0840 450 Gene3D Phosphorylase Kinase; domain 1 121 184 - -
HCH3g0840 450 Gene3D Phosphorylase Kinase; domain 1 62 102 - -
HCH3g0840 450 Gene3D Transferase(Phosphotransferase) domain 1 185 249 - -
HCH3g0840 450 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0840 HCH-Chr3:6493464 HCH6g0968 HCH-Chr6:44503937 2.50E-97 dispersed
HCH3g0840 HCH-Chr3:6493464 HCH6g0888 HCH-Chr6:43684662 2.10E-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81419 PF00069 Pkinase 1.50E-29 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0840 - - - 0.0