Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g0848 | ATGGAGAATGGTGATATTGAGAGCGGAGAAGATGAATTCCACGGGCAGCGAGGCAGGAAGTACCGGCCGGTGGAAGCTAGTGATCGTGCCGTTCTTGAGATGTCTTCTATGGATCCTGGATCTTCTTCTGCTGCTTCTTCTTCTGTGCCCAATCATAACCTTCATTCTCTCAAGAAAGTAAAAGTGAGTTCTCAGTCAGGTGCTGATGACAGAGAAGGGAACTCTCCTACTCATATTGGAAATGGTCCTCAGAGAGAATCTAAGCTGGAGTTTTTTGGTTTTGATTCTCTTGTCAATATTCTAGGCCTTAAGAGTATGATGGGTGAGCAAATTCCTGCACCTTCTAGTCCTCGAGATGGTGAGAATGTTTCCATCACTCATGGGCTGCCAAAGACTACCGAAGTCAAATCGGGTACGTTGATGGGTGTATTTATCCCGTGCTTACAGAACATATTGGGAATCATTTACTATATCCGTTTTTCTTGGATTGTTGGCATGGCTGGTATCGGTGAATCATTAGTACTGGTGGCATTTTGTGGCTTATGTACCTTCTTGACTTCAATTTCACTGAGTGCTATTGCAACTAATGGTGCAATGAAGGGTGGGGGACCATATTATCTCATAGGTCGTGCCCTTGGTCCAGAGGTCGGAGTTAGCATTGGGCTATGTTTCTTTCTTGGAAATGCAGTTGCTGGAGCTCTTTATGTATTGGGAGCTGTTGAAACCTTTTTAAAGGCTGTGCCAGCTGCAGGGATATTCAGAGAGACTATAACAAAAGTTAATGGAACAACTGTTGCAGAACCAATACAAAGTCCAAGTTCACATGACTTGCAAATTTATGGCATTATTGTGACCATTCTCTTGTGCTTCATTGTGTTTGGTGGTGTGAAAATGATTAACAGGGTTGCTCCTGCTTTCCTTATTCCAGTCTTGTTCTCTCTATTCTGCATATTTATTGGAGTTTTTCTGGCAAGAAAAGACAACCCTGCAGATGGTGTCACCGGCCTGAGTTTGGAATCTTTCAAAGAAAATTGGAGTTCTGATTATCAAACGACTAACAATGCTGGAATTCCTGATCCTGAAGGAAAAGTATTCTGGAATTTCAATGCATTGGTTGGTCTCTTTTTTCCTGCAGTTACAGGAATAATGGCAGGTTCAAATAGATCAGCTTCACTGAAAGATACTCAGCGATCAATTCCTATTGGAACATTAGCTGCTACTCTTACAACAACTTTAATGTATCTTGTCTCTGTGCTGCTGTTTGGAGCGTTGGCAACCAGGGAGAAGTTGTTGACTGACAGGCTTCTTACTGCTACGGTTGCTTGGCCTTTCCCGGCAATTATTTATGTTGGAATTATTCTATCAACCCTTGGAGCTGCTCTTCAGAGCCTAACAGGAGCCCCTCGCTTGCTGGCAGCCATAGCTAATGATGATATATTACCACTTTTAAATTATTTCAAAGTAGCAGATGGGAGTGAACCTTACATTGCGACCCTCTTTACTGCATTGCTCTGTATTGGATGTGTAGTAATTGGGAATCTTGATCTTATCACACCAACTGTAACCATGTTTTTTCTTTTGTGTTATACCGGTGTCAACTTATCCTGCTTCCTTTTGGATCTACTAGATGCTCCCAGTTGGCGTCCACGATGGAAATTTCATCACTGGAGCCTCTCACTTCTTGGAGCATCACTTTGTGTAGTGATAATGTTCTTGATCTCCTGGTCGTTCACTATAGTGTCTTTAGCCCTTGCAAGCCTCATATATTATTACGTATGCCTTAGAGGTAAGGCTGGGGACTGGGGTGACGGTTTCAAGAGCGCATATTTCCAACTTGCTCTCCGCAGCCTTCGTTCACTTGGAGCGAGCCAAGTTCACCCAAAGAATTGGTATCCTATACCCTTGATATTTTGCCGGCCATGGGGGAAACTTCCAGAAAATGTACCTTGTCACCCTAAACTAGCTGACTTTGCAAACTGTATGAAGAAAAAAGGCCGTGGCATGTCAATATTTGTTTCTATATTAGATGGAGATTACCATGAACGGGTTGAAGATTCCAAAGCTGCCTGCAAGCAGCTTGCTACTTATATTGATTACAAGCGTTGTGAAGGTGTGGCAGAGATTGTTGTGGCTCCCACAATGTCTGATGGTTTCAGGGGTATTGTTCAGACCATGGGCCTTGGAAATCTCAAGCCTAACATTGTTGTTATGCGGTATCCCGAAATATGGCGTCGTGAGAACTTAACCGAAATTCCAGCTACTTTTGTTGGAATAATCAATGACTGCATTGATGCTAACAAGGCAGTCGTTATTGTTAAGGGTCTTGATGAATGGCCTAATGAATATCAGAGGCAGTATGGAACTATTGATTTGTATTGGATTGTGAGAGATGGTGGTCTTATGCTTCTCCTCTCTCAGCTCCTCCTTACCAAGGCGAGCTTTGAGAGCTGTAAGATTCAGGTCTTCTGCATTGCAGAGGAGGATTCTGATGCTGAGGCCCTAAAAGCTGATGTCAAAAAGTTTTTGTATGATCTTCGGATGCAAGCGGAGGTGATCGTCATATCAATGAAATCATGGGATGTACAAGTCGAGGGAGGGCAAGATGAATCATTGGATGCATTTACTTCTGCTCAACGAAGGATTTCTAGTTATTTAGATGAAATGAAGGCAGCGGCTGAGAAAAGAGGAACCACACTAATGGCTGACGGGAAACCTGTCAGTGTGGATGAGCAGCAAGTGGAAAAGTTTCTAGATACAACTATGAAGTTGAACTCAACAATACTGAGATACTCGAGGATGTCGGCCGTAGTGTTCGTGAGCCTGCCACCACCTCCTATCAATCACCCTGCATACTTCTATATGGAGTATTTGGATTTGTTGGTTGAGAATGTCCCCAGGCTCTTGATGGTAAGAGGATACCGCAGAGACGTCGTAACTTTGTACACATAG | 2949 | 43.27 | MENGDIESGEDEFHGQRGRKYRPVEASDRAVLEMSSMDPGSSSAASSSVPNHNLHSLKKVKVSSQSGADDREGNSPTHIGNGPQRESKLEFFGFDSLVNILGLKSMMGEQIPAPSSPRDGENVSITHGLPKTTEVKSGTLMGVFIPCLQNILGIIYYIRFSWIVGMAGIGESLVLVAFCGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGALYVLGAVETFLKAVPAAGIFRETITKVNGTTVAEPIQSPSSHDLQIYGIIVTILLCFIVFGGVKMINRVAPAFLIPVLFSLFCIFIGVFLARKDNPADGVTGLSLESFKENWSSDYQTTNNAGIPDPEGKVFWNFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTLMYLVSVLLFGALATREKLLTDRLLTATVAWPFPAIIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPLLNYFKVADGSEPYIATLFTALLCIGCVVIGNLDLITPTVTMFFLLCYTGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGASLCVVIMFLISWSFTIVSLALASLIYYYVCLRGKAGDWGDGFKSAYFQLALRSLRSLGASQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHERVEDSKAACKQLATYIDYKRCEGVAEIVVAPTMSDGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIDANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKASFESCKIQVFCIAEEDSDAEALKADVKKFLYDLRMQAEVIVISMKSWDVQVEGGQDESLDAFTSAQRRISSYLDEMKAAAEKRGTTLMADGKPVSVDEQQVEKFLDTTMKLNSTILRYSRMSAVVFVSLPPPPINHPAYFYMEYLDLLVENVPRLLMVRGYRRDVVTLYT | 982 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 6588353 | 6607709 | + | evm.model.ptg000005l.669 | HCH3g0848 | 541576 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g0848 | 982 | Gene3D | Amino acid/polyamine transporter I | 135 | 600 | - | - | |
| HCH3g0848 | 982 | MobiDBLite | consensus disorder prediction | 36 | 82 | - | - | |
| HCH3g0848 | 982 | MobiDBLite | consensus disorder prediction | 1 | 85 | - | - | |
| HCH3g0848 | 982 | MobiDBLite | consensus disorder prediction | 8 | 27 | - | - | |
| HCH3g0848 | 982 | FunFam | Cation-chloride cotransporter 1 | 136 | 600 | - | - | |
| HCH3g0848 | 982 | Pfam | Solute carrier family 12 | 784 | 981 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| HCH3g0848 | 982 | Pfam | Solute carrier family 12 | 652 | 773 | IPR018491 | GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0022857(InterPro) | |
| HCH3g0848 | 982 | PANTHER | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS | 118 | 982 | IPR004842 | GO:0006811(InterPro)|GO:0006884(PANTHER)|GO:0015377(InterPro)|GO:0015379(PANTHER)|GO:0016020(InterPro)|GO:0055064(PANTHER)|GO:0055075(PANTHER)|GO:1902476(PANTHER)|GO:1990573(PANTHER) | |
| HCH3g0848 | 982 | Pfam | Amino acid permease | 142 | 610 | IPR004841 | GO:0016020(InterPro)|GO:0055085(InterPro) |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH3g0848 | K14427 | - | csv:101216218 | 1747.25 |