Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0857 ATGGCTCTTGCTATGCATAATAAGCAGCAGCAGCAACAGCAACAGATGGATTCAAACAAGTATGTGAGATATACACCTGAGCAAGTGGATGCTTTAGAGAGGGTATATTCAGAATGTCCAAAACCTAGCTCTTTGAGAAGGCAACAGCTTATTAGGGAATGTCCTATTCTCTCTCATATTGAGCCAAAACAAATCAAAGTTTGGTTCCAGAATCGTAGATGCCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTGAATAGGAAGCTGAATGCCATGAACAAGTTGTTGATGGAAGAGAATGACCGTCTGCAGAAGCAGGTCTCTCACTTGGTTTATGATAATGGATACATGCGACAGCAACTGCATAGTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAGCACCATCAACAGCAAAACCCAACTAAGCATACCCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCAATAGCTGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGAACTGCTGTCGACTGGGTCCAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGAATTGTTGCTGTTGCCCGCAACTGTACTGGGGTAGCAGCACGTGCCTGCGGTCTCGTGAGTCTTGAGCCCACAAAGGTGGCTGAAATTCTCAAAGATCGTCTAACATGGTTTCGTGACTGCCGATGTGTTGATGTGTTGAGTGCAGTCCCTACAGGAAATGGAGGGACGATAGAGCTCTTATACATGCAGACATATGCACCAACAACTTTGGCAGCAGCACGTGACTTTTGGACGCTGCGATACACTACGAGCTTGGAAGATGGCAGCCTCGTGATATGTGAGAGATCACTGACTCCTTCTACTGGTGGCCCATCAGGGCCTCCTGCATCAAGTTTTGTAAGAGCTGAAATGCTTCCAAGCGGGTATCTGATCCGAGCTTGTGATGGTGGTGGTTCCATTATTCACATTGTTGATCATATTGATTTAGATGCTTGGAGTGTTCCTGAAGTTCTGAGGCCACTTTATGAATCTACAAAGATTCTAGCTCAGAGAATGACTGTTTCTGCCTTGCGCTACATACGGCAAATTGCTCAAGAGATGAGCGGAGAAATTCAATTGGGTGGGGGCCGCCAACCAGCTGTTTTAAGGACTTTCAGTCAAAGGCTCTGTAGGGGTTTCAATGACGCTGTCAATGGATTTGTGGATGATGGCTGGTCGCTAATGGATAGTGACGGAGTAGAGGATGTGACAATAGTTATTAATTCATCTCCAAACAAATTCCTGGGCTCTCAATATAACACATCATTGTATCCTACTTCGGGAGGTGTGTTGTGTGCCAAGGCATCAATGCTGTTGCAGAATGTTCCCCCTGCTTTGCTTGTTCGGTTTTTGAGGGAACATCGTTCCGAATGGGCTGATTATGGAGTTGATGCCTACTCTGCTGCATGTCTTAAAGCCAGTGCTTATGCTGTTCCCTGTGCAAGACCTGGTGGCTTCCCCAGTAGCCAGGTCATCTTACCACTTGCTCAGACTGTTGAGAATGAGGAGTTATTGGAGGTGGTTCGGCTAGAGGGCCACGCAATGTTCCCTGAAGAAATGGCTTTGGCTGGGCGGGATATGTACCTATTACAGCTCTGTAGTGGGGTTGATGAAACTGCAGTTGGTGCCTGTGCTCAGCTCGTGTTTGCGCCTATAGATGAATCATTTGCTGATGATGCTCCCTTGCTGCCATCTGGTTTTCGTGTCATACCATTAGAGTCCAAAACGGATGGGCCTGCTGCTACTCGAACATTGGATTTGGCTTCAACTCTCGAAGTCAGACCCGGAAGTGGCCGTCCAGCTGGTGAAGATGATATTACCAATTATAACCTCAGGTCTGTGTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGACAGTGTAGCTGCAATGGCTAGACAATATGTGCGAAGTGTTGTGGGATCAGTTCAAAGGGTTGCCACAGCTATTTCCCCCTCCCAACTTGGTCCCCAGTTGGGGTCGAAAACCCTTCCGGGCTCCCCTGAGGCTCTTACCTTAGCCCAATGGATATACCGAAGCTACAGGATTCACACGGGAGCAGAGCTCTTTCCGGTTGAATCCCAGTCTCATGATACCGTCTTGAAACAGCTTTGGGGCCATTCCGATACCATCTTGTGCTGCTCTGTGAAAACTAATGCGTCTCCTGTGTTCACATTTGCAAATCAAGCTGGACTTGATATGCTTGAAACTACCCTCGTGGCTCTTCAAGATATAATGCTCGAAAAGATTCTGGACGATGCAGGCCGAAAGATTCTCTGCTCCGAGTTCTCCAAGATAATGCAACAGGGATTCACATATCTTCCAGCAGGGATATGTGTCTCGAGTATGGGCAGGCCGGTGTCGTACGAACAGGCAATTGCATGGAAGGTCATGAACGACGACGATGTCAATCACTGTCTGGCTTTCATGTTCATAAACTGGTCGTTTATGTGA 2544 47.25 MALAMHNKQQQQQQQMDSNKYVRYTPEQVDALERVYSECPKPSSLRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSHLVYDNGYMRQQLHSASGTTTDNSCESVVMSGQHHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVARNCTGVAARACGLVSLEPTKVAEILKDRLTWFRDCRCVDVLSAVPTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTPSTGGPSGPPASSFVRAEMLPSGYLIRACDGGGSIIHIVDHIDLDAWSVPEVLRPLYESTKILAQRMTVSALRYIRQIAQEMSGEIQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGVEDVTIVINSSPNKFLGSQYNTSLYPTSGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARPGGFPSSQVILPLAQTVENEELLEVVRLEGHAMFPEEMALAGRDMYLLQLCSGVDETAVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTDGPAATRTLDLASTLEVRPGSGRPAGEDDITNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRSVVGSVQRVATAISPSQLGPQLGSKTLPGSPEALTLAQWIYRSYRIHTGAELFPVESQSHDTVLKQLWGHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVALQDIMLEKILDDAGRKILCSEFSKIMQQGFTYLPAGICVSSMGRPVSYEQAIAWKVMNDDDVNHCLAFMFINWSFM 847
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6704258 6710923 - evm.model.ptg000005l.660 HCH3g0857 541585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0857 847 ProSiteProfiles START domain profile. 158 386 IPR002913 GO:0008289(InterPro)
HCH3g0857 847 MobiDBLite consensus disorder prediction 1 21 - -
HCH3g0857 847 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
HCH3g0857 847 SUPERFAMILY Bet v1-like 168 379 - -
HCH3g0857 847 CDD homeodomain 20 80 IPR001356 GO:0003677(InterPro)
HCH3g0857 847 Gene3D - 198 381 IPR023393 -
HCH3g0857 847 SUPERFAMILY Homeodomain-like 20 82 IPR009057 -
HCH3g0857 847 SMART START_1 167 377 IPR002913 GO:0008289(InterPro)
HCH3g0857 847 SMART HOX_1 17 83 IPR001356 GO:0003677(InterPro)
HCH3g0857 847 CDD bZIP 72 111 - -
HCH3g0857 847 CDD START_ArGLABRA2_like 162 378 - -
HCH3g0857 847 Pfam MEKHLA domain 702 846 IPR013978 -
HCH3g0857 847 Pfam Homeodomain 20 78 IPR001356 GO:0003677(InterPro)
HCH3g0857 847 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 13 847 IPR044830 GO:0003700(InterPro)
HCH3g0857 847 Coils Coil 75 109 - -
HCH3g0857 847 Gene3D - 10 86 - -
HCH3g0857 847 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677(InterPro)
HCH3g0857 847 Pfam START domain 168 375 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1180 HCH-Chr2:54309966 HCH3g0857 HCH-Chr3:6704258 0.00E+00 dispersed
HCH3g0857 HCH-Chr3:6704258 HCH3g1240 HCH-Chr3:46484562 0.00E+00 dispersed
HCH12g0744 HCH-Chr12:4735806 HCH3g0857 HCH-Chr3:6704258 0.00E+00 transposed
HCH14g1123 HCH-Chr14:38147369 HCH3g0857 HCH-Chr3:6704258 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33347 PF01852 START 9.20E-51 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0857 K09338 - csv:101211318 1517.29