Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0858 ATGAGTAATTTTGCGGTGGAATTCAAGAGGCCTGCCTCAGCTAAAAGTAGATTAAAAGATTTGTTGCTTCAAAAAGATAATCAATTTTGTGCTGATTGTGGTGCCCCAGATCCTAAATGGGCCTCTGCAAATATTGGTGTGTTTCTATGCTTGAAGTGTAGTGGAGTACATAGAAGCCTTGGAACACATCTATCAAAGGTTTTGTCAATAACGTTGGATGATTGGTCTGATGATGAAATTGATGCAATGATTGAGGTTGGAGGAAATGGTTCTGCTAATGCAATTTATGAGGCTTTTATCCCTGATGGATACCCAAAGCCTGGACCAGATGCCAGCCCCGAGGAGCGCTCAAAATTCATTCGGTCTAAGTATGAACTTCAAGAATTTCTAAAACCAAGCTTGCGTATTGTATCAAGTAACTCTTCAAAGAGCTCTCATGAGCCAAGTTATCTTCAAGAGATCACCGATAGCTTCCGAAGTTTGAATTCTTCACAGAAATCATCACAAGAAGGCATGGTGGAATTTATTGGAATACTGAAGGTCAAGGTGATTAAAGGCAAAAACTTAGCTGTGAGAGACGTGAAGTCAAGTGATCCTTACGTCGCCTTGACCCTTGGGAAACAGACTGTTCAGACAAAAGTAATAAAGAGCAACTTGAATCCAGAATGGAATGAGGAACTCATGCTGTCTGTTCCTCAGGGATATGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATTATATCGTCTAATGACTTGATGGGCGAAGCACAAATCGATCTGCAGCCAATAATAACGTCAGCACTGGGATTTGGAGATGCTGAAATGTTTGAGAATATGCAGATAGGAAAATGGTTGAAGTCGGATGATAACGCCCTCATCGTTGACAGCGCTGTCAACATTGTGGACAGGAAGGTGAAACAAGAGGTATCTCTCAAGCTCCAAAACGTTGAATCAGGTGAAGTGTACTTGGAACTAGAATGGATGTCTCTCAATCAGTAG 1002 41.62 MSNFAVEFKRPASAKSRLKDLLLQKDNQFCADCGAPDPKWASANIGVFLCLKCSGVHRSLGTHLSKVLSITLDDWSDDEIDAMIEVGGNGSANAIYEAFIPDGYPKPGPDASPEERSKFIRSKYELQEFLKPSLRIVSSNSSKSSHEPSYLQEITDSFRSLNSSQKSSQEGMVEFIGILKVKVIKGKNLAVRDVKSSDPYVALTLGKQTVQTKVIKSNLNPEWNEELMLSVPQGYGPLKLQVFDHDIISSNDLMGEAQIDLQPIITSALGFGDAEMFENMQIGKWLKSDDNALIVDSAVNIVDRKVKQEVSLKLQNVESGEVYLELEWMSLNQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6733170 6737581 + evm.model.ptg000005l.659 HCH3g0858 541586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0858 333 CDD C2_ArfGAP 176 320 - -
HCH3g0858 333 CDD ArfGap 18 124 - -
HCH3g0858 333 ProSiteProfiles C2 domain profile. 160 276 IPR000008 -
HCH3g0858 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 330 IPR035892 -
HCH3g0858 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 5 333 IPR044518 GO:0005096(InterPro)|GO:0005543(InterPro)
HCH3g0858 333 SMART C2_3c 178 273 IPR000008 -
HCH3g0858 333 FunFam stromal membrane-associated protein 1 isoform X1 3 135 - -
HCH3g0858 333 Gene3D Arf GTPase activating protein 3 136 IPR038508 -
HCH3g0858 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 144 IPR001164 GO:0005096(InterPro)
HCH3g0858 333 SMART arf_gap_3 15 137 IPR001164 GO:0005096(InterPro)
HCH3g0858 333 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
HCH3g0858 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096(InterPro)
HCH3g0858 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096(InterPro)
HCH3g0858 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096(InterPro)
HCH3g0858 333 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 175 333 - -
HCH3g0858 333 Pfam C2 domain 177 264 IPR000008 -
HCH3g0858 333 Gene3D C2 domain 175 333 IPR035892 -
HCH3g0858 333 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1112 HCH-Chr12:8637692 HCH3g0858 HCH-Chr3:6733170 3.20E-23 dispersed
HCH1g0635 HCH-Chr1:55338808 HCH3g0858 HCH-Chr3:6733170 2.60E-92 dispersed
HCH3g0858 HCH-Chr3:6733170 HCH8g1117 HCH-Chr8:46904233 8.30E-34 dispersed
HCH14g1126 HCH-Chr14:38170846 HCH3g0858 HCH-Chr3:6733170 2.90E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0858 K12486 - csv:101211569 553.132