Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0862 ATGTCTTTGCTTAGACCTTACGGCAAAGTCGACGATAACGACCTGTTTCGGCTTGACGCTCAAAGGAGGACTCGGAAGAGAATTGCCATCATTGTTTTGTCTTCTGTTGTTCTGGTGGGTGTTGTTCTTGCTGTTGTTTTTGGAACTAGAAATGGTTCCAAAAATGAAAGTGGCACCAACAATCCTCTTTCATCTAGCATCAAAGCAATCTGTGACTTGACTTTGTATCCTGATACTTGTTATAGTACTTTTGGTCCCTTGATCAACTCGAGCAATCTTCGCCCCGACCAAATCTCTAAGCTTTCAGTTCAAGCAGCGCTCAGCGAATTGTCGCGAGCAACCGACTACATTTTTAAGCACGCCATTACCAATTCAACTGACAATATGACGGTTTTGGCTTTGGAAAGTTGCCATGAACTTTTGGACTTGGCATTGGATCATCTGAATATCTCACTGTCTTCTAGTCAGATGACATTGCTGAATGCTGTGGATGATCTCCAAACATGGCTAAGTTCAGCAGCTACTTACCAACAGACTTGCATTGAAGGCCTTGAGGAAGTCAATCCGGCTTTGAAGGACATTATTGCAGGGTACTTGAAGAACTCCACTGAATTGACCAGCAATGGCCTTGCCATTGTGTCCTTTCTCTCGAAACTTTCGGGTTCTATACAGCTACGGAGATTGATGAATTATGTAGATCATAACAGTGAGTCGAATTGGGCGAATCCAATAGTCCGGAAACTCGCTCAGACCGATCTCAGGAAGCAGGCCGACTTCGTCGTAGCGAAAGACGGTTCGAGTAAGTACAAAACAATCGCTGCAGCTCTCAAGGCCGTTCCTGATAAGAGCAAGAAGAGAACTGTGATCTATGTGAAGAAGGGAACTTATACTGAGAATGTAGAAGTGGTGAAGAACAAGTGGAATGTGGTGATGATTGGTGATGGAATGAAAGCAACTATTGTGTCTGGGAAGCTCAACTTCATAGATGGAACTCCAACATTTTCAACTGCAACATTTGCTGCAAAGGGAAAAGGCTTTATTGCTATAGACATGGGCTTCGAGAACAAGGCTGGACCGAGCAAACACCAGGCAGTCGCCTTGATGTCAACCTCTGACCAATCGATCTTCTACCGATGTGAAATGGACGCGTACCAGGACACTCTCTACGCCCACTCTAACCGTCAATTCTATCGTGAATGCAGCATCCACGGCACGGTCGATTTCATCTTTGGTAATTCGGCTGTAGTTCTACAAAACTGCAGCATTTTGCCCAAGTTGCCTCTTTCAGGCCAAAAGAACACAATCACTGCTCAAGGCCGGTTTGATCCTAATCAAAACACTGGCATTTCAATACAAGATTCTTCCATCAAACCATATGAAAACTTGAAAACTACTCAAACTTACCTCGGCCGTCCGTGGAAGGACTACTCGACAACCGTATTTATGCAGAGCTATTTGGGGAGCTTAATTGACCCAACTGGGTGGCTGCCTTGGGTAGGAACATCAGCACCAGATACCATTTTCTATGCTGAATTCCAAAACAATGGCCCTGGTTCTTCCACAGACAAAAGAGTGAAATGGAAGGGTGTGAGGAAAATCGACACCAAGGCTGCTCAAAAGTTTACAGTCTCCTCCTTCATTAGTGGTAAAGATTGGATATCAAATGCACAAGTTCCCTACAAATCCAGCCTTTGA 1695 44.48 MSLLRPYGKVDDNDLFRLDAQRRTRKRIAIIVLSSVVLVGVVLAVVFGTRNGSKNESGTNNPLSSSIKAICDLTLYPDTCYSTFGPLINSSNLRPDQISKLSVQAALSELSRATDYIFKHAITNSTDNMTVLALESCHELLDLALDHLNISLSSSQMTLLNAVDDLQTWLSSAATYQQTCIEGLEEVNPALKDIIAGYLKNSTELTSNGLAIVSFLSKLSGSIQLRRLMNYVDHNSESNWANPIVRKLAQTDLRKQADFVVAKDGSSKYKTIAAALKAVPDKSKKRTVIYVKKGTYTENVEVVKNKWNVVMIGDGMKATIVSGKLNFIDGTPTFSTATFAAKGKGFIAIDMGFENKAGPSKHQAVALMSTSDQSIFYRCEMDAYQDTLYAHSNRQFYRECSIHGTVDFIFGNSAVVLQNCSILPKLPLSGQKNTITAQGRFDPNQNTGISIQDSSIKPYENLKTTQTYLGRPWKDYSTTVFMQSYLGSLIDPTGWLPWVGTSAPDTIFYAEFQNNGPGSSTDKRVKWKGVRKIDTKAAQKFTVSSFISGKDWISNAQVPYKSSL 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6805748 6807516 + evm.model.ptg000005l.655 HCH3g0862 541590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0862 564 PANTHER PECTINESTERASE 27 555 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
HCH3g0862 564 ProSitePatterns Pectinesterase signature 2. 402 411 IPR033131 -
HCH3g0862 564 FunFam Pectinesterase 252 564 - -
HCH3g0862 564 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 217 IPR035513 -
HCH3g0862 564 NCBIfam pectinesterase inhibitor domain 36 214 IPR006501 GO:0004857(InterPro)
HCH3g0862 564 Gene3D - 253 564 IPR012334 -
HCH3g0862 564 Pfam Plant invertase/pectin methylesterase inhibitor 65 212 IPR006501 GO:0004857(InterPro)
HCH3g0862 564 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 218 IPR035513 -
HCH3g0862 564 FunFam Pectinesterase 63 217 - -
HCH3g0862 564 SMART PMEI_2 62 212 IPR006501 GO:0004857(InterPro)
HCH3g0862 564 Pfam Pectinesterase 258 549 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH3g0862 564 CDD PMEI-like_3 69 218 - -
HCH3g0862 564 SUPERFAMILY Pectin lyase-like 256 560 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0042 HCH-Chr3:280176 HCH3g0862 HCH-Chr3:6805748 2.80E-15 dispersed
HCH3g0862 HCH-Chr3:6805748 HCH6g1710 HCH-Chr6:49794629 6.60E-116 dispersed
HCH3g0862 HCH-Chr3:6805748 HCH6g0035 HCH-Chr6:490211 1.50E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0862 - - - 0.0