Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0865 ATGAATCCTTTGTATAAGCAAGTCCCAGTTTTGATTCACAAAGGGGAACCCATTATTGAATCTTTGATTATACTTGAATATATTCATGAGGTTTGGAAGAATCATGGAGATTATCATGTGCTTCCCTCTCATCCTTATGACATAGCCCATGCTAGGTTTTGGGCCAATTACGTCGATAAGAAGATTTATCCCCTTGGAAGTCAATTGTTGGATAGTGATAAGAAAGAAGAGGAGAGAGAAGCAGCAGCAAAGGAACTCTTGGAGGCATTGAAAAGGCTAGAAGGAGAGCTTGGAGAAAAGGCCTTTTTTGGAGGAGAAGTATTTGGATTTGTAGATGTGGCACTCATCCCATTCTATTGCATGTTCCTTTCATTCCAAAAACTTGGAAATCTAAACTTGGAAGAAGAGTGCCCTAAACTCCTTGAATGGGGGAAGAGGTGCAGCCAAAGAGAGAGTGTGGCAAAGAATTTGCCTGACCAAAATGAGGTTTATGACTTCATTTGCACTTACTTTTTAAAAACCACTTGA 528 39.77 MNPLYKQVPVLIHKGEPIIESLIILEYIHEVWKNHGDYHVLPSHPYDIAHARFWANYVDKKIYPLGSQLLDSDKKEEEREAAAKELLEALKRLEGELGEKAFFGGEVFGFVDVALIPFYCMFLSFQKLGNLNLEEECPKLLEWGKRCSQRESVAKNLPDQNEVYDFICTYFLKTT 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 6846032 6847454 + evm.model.ptg000005l.652 HCH3g0865 541593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0865 175 Pfam Glutathione S-transferase, C-terminal domain 53 151 IPR004046 -
HCH3g0865 175 SUPERFAMILY GST C-terminal domain-like 31 171 IPR036282 -
HCH3g0865 175 Gene3D - 44 174 - -
HCH3g0865 175 FunFam Putative GST6 protein 44 174 - -
HCH3g0865 175 SUPERFAMILY Thioredoxin-like 1 35 IPR036249 -
HCH3g0865 175 Pfam Glutathione S-transferase, N-terminal domain 2 29 IPR004045 -
HCH3g0865 175 SFLD Main.3: Omega- and Tau-like 1 171 IPR045073 -
HCH3g0865 175 Coils Coil 72 96 - -
HCH3g0865 175 SFLD Glutathione Transferase (cytosolic) 1 171 IPR040079 -
HCH3g0865 175 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 36 IPR004045 -
HCH3g0865 175 CDD GST_C_Tau 45 170 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
HCH3g0865 175 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 44 171 IPR010987 -
HCH3g0865 175 Gene3D Glutaredoxin 1 43 - -
HCH3g0865 175 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 167 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0865 HCH-Chr3:6846032 HCH6g0589 HCH-Chr6:34891142 4.50E-47 dispersed
HCH3g0865 HCH-Chr3:6846032 HCH3g0054 HCH-Chr3:322409 2.30E-19 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0865 K00799 - sly:101244300 179.104