Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0894 ATGTTTTGCAGCTTATTTGAGATGGAGAATTATCAAGGTGATTTAACTGATATAGTTCGTGGCGGAGGCGCCGCCACCACCGGAGCTTATAGCTATAGCTGTGCCACCGGATTATCGTCGGATTATTCACTTGACTCTACTTCCTGTGACCATCATCTTTGGCCTCAGCTCCCTTCCTCCGATGATCACATGAATTTTGGAGATCCATTTTCAACATCCCAAGATCCATTTCTTCATCACATGTCTGATTCTATTTCCACTTTCAATTTTGTTACTTCCAATTCTCAACAAATGATCCCAGGTTCTCGGGGTTTCCGTGGCGGTGGTGATGGTGGTGGTGGTGATGCAGTGTCTCAAAGACCTTGTAATATATTTTCACGTATGCTGGAGATCTCTCCAAGTTCAAAATTCGGCAGCGGTGTAACAACACCTTGTGACTCGGCGGCGGCGATAGGGAATTCTCCTAGCTCGACGTCGATAAAAGCATCGATTTCCGCTGCCGTGGCCGCTCCGAGTAGTGACATGATGATAAACAATGGCAGCAATTCCAAGCCACTTTGCTTAATAGATAACTCTGGGATTCAGATCTCTTCTCCACGAAATCCGGCTATTAAAAGAAGGAAGAGCCAGGTGAAGAAGGTAGTGTGTATCCCAGCTCCAGCACCAGCAAATAGCAGACCAAGCAGTGGGGAAGTGGTTCCTTCTGATCTTTGGGCTTGGAGGAAGTACGGACAAAAACCCATCAAAGGATCTCCATATCCAAGGGGGTATTACCGGTGCAGCAGCTCAAAGGGTTGCTCCGCCCGTAAACAGGTAGAGCGCAGCCGCACTGATCCAAACATGTTAGTCATCACCTACACCTCCGATCACAACCACCCGTGGCCGACGCAACGTAACGCTCTCGCCGGCTCGACCCGTGGCCAGCCCTCAAGATCATCATCTTCTATGAACAAGACGGGTACTCCATCTTCTTCAGCTCAGAAAATAACCTCTTTAAAGGATGATCAAAACTATGACAACACCAGCAGTAACGACGGTGAGCTGACTATGGCTTCCCCGTCTCCGTCTCCGCTAGTAGCTGCTGCAAATTGCGGTGCAGCCAAGGAGTTGGAAGATCAGATAGAGATGGAAGATGGAGATCATCAAGAGTTTCCCTATAATGAGCTGACTTTGCCTGCTTCCAATGATTGTGCTTCAGACTTTTTCTCAGATTTTGGAGAGATGAGTGATTATCTTTTGTTCAGCCAAAACTTGCTCACGGGTAAAGATGATGGTCGTAAAGATGATCGGATCAAGGGCGGCGGCAGCGGCGTAGATCCATTTTCTCATGTGATCTATGGTTGGCCAGAGAACAACAACGATACCAATTCCTCCAGTTCATGA 1383 47.72 MFCSLFEMENYQGDLTDIVRGGGAATTGAYSYSCATGLSSDYSLDSTSCDHHLWPQLPSSDDHMNFGDPFSTSQDPFLHHMSDSISTFNFVTSNSQQMIPGSRGFRGGGDGGGGDAVSQRPCNIFSRMLEISPSSKFGSGVTTPCDSAAAIGNSPSSTSIKASISAAVAAPSSDMMINNGSNSKPLCLIDNSGIQISSPRNPAIKRRKSQVKKVVCIPAPAPANSRPSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSDHNHPWPTQRNALAGSTRGQPSRSSSSMNKTGTPSSSAQKITSLKDDQNYDNTSSNDGELTMASPSPSPLVAAANCGAAKELEDQIEMEDGDHQEFPYNELTLPASNDCASDFFSDFGEMSDYLLFSQNLLTGKDDGRKDDRIKGGGSGVDPFSHVIYGWPENNNDTNSSSS 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7511438 7514517 - evm.model.ptg000005l.623 HCH3g0894 541622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0894 460 MobiDBLite consensus disorder prediction 423 460 - -
HCH3g0894 460 SUPERFAMILY WRKY DNA-binding domain 232 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0894 460 ProSiteProfiles WRKY domain profile. 229 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0894 460 SMART WRKY_cls 234 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0894 460 FunFam probable WRKY transcription factor 14 207 288 - -
HCH3g0894 460 MobiDBLite consensus disorder prediction 278 351 - -
HCH3g0894 460 Gene3D WRKY domain 207 288 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0894 460 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 85 387 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
HCH3g0894 460 Pfam WRKY DNA -binding domain 236 293 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH3g0894 460 MobiDBLite consensus disorder prediction 259 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g1002 HCH-Chr14:37326500 HCH3g0894 HCH-Chr3:7511438 7.60E-29 dispersed
HCH3g0728 HCH-Chr3:5211256 HCH3g0894 HCH-Chr3:7511438 2.10E-30 dispersed
HCH3g0894 HCH-Chr3:7511438 HCH7g1655 HCH-Chr7:48631499 9.10E-39 dispersed
HCH14g1146 HCH-Chr14:38307451 HCH3g0894 HCH-Chr3:7511438 1.90E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33349 PF03106 WRKY 5.70E-25 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0894 - - - 0.0