Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0911 ATGAAGGAAAATGGGAGAAAACAAGGGGCAGCATCACCTTGTGCAGCATGCAAACTTTTGAGGAGAAGATGCGCTCAAGACTGTGTTTTTGCTCCATATTTTCCAGCCGATGAGCCTCATAAGTTCGCTAATGTCCACAAGGTCTTTGGCGCTAGCAATGTCAACAAAATGTTGCAGGAGCTGCCCGTTGAACAGCGCGGCGACGCAGTGAGCAGCTTAGTGTACGAAGCCAACGCCCGTGTCCGAGATCCTGTGTACGGCTGCGTGGGAGCCATATCATCTCTTCAACAGCAGATAGATGCGCTCCAGACCCAACTGGCTCTGGCTCAAGCCGAGGTGGTTCATCTTCGGGTTCGCCAGTCTGCATCATTTGGGCTGAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCCAGGCTCATGGGCTCACAACCCAGGCCCATTTTTGAGATGGATATGGTTGTGGACCAGGTCATGGGGGACTCCATGTGGTAG 498 52.81 MKENGRKQGAASPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQELPVEQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQSASFGLSPTSPSNSGSPSSRLMGSQPRPIFEMDMVVDQVMGDSMW 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 7895873 7900021 + evm.model.ptg000005l.606 HCH3g0911 541639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0911 165 MobiDBLite consensus disorder prediction 123 145 - -
HCH3g0911 165 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
HCH3g0911 165 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
HCH3g0911 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 122 - -
HCH3g0911 165 MobiDBLite consensus disorder prediction 123 143 - -
HCH3g0911 165 Coils Coil 92 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0339 HCH-Chr1:49997334 HCH3g0911 HCH-Chr3:7895873 4.60E-47 dispersed
HCH2g0998 HCH-Chr2:53245819 HCH3g0911 HCH-Chr3:7895873 4.90E-40 dispersed
HCH3g0362 HCH-Chr3:2309309 HCH3g0911 HCH-Chr3:7895873 1.80E-37 dispersed
HCH3g0911 HCH-Chr3:7895873 HCH3g1473 HCH-Chr3:52775859 1.00E-40 dispersed
HCH3g0911 HCH-Chr3:7895873 HCH2g0930 HCH-Chr2:52711609 3.00E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33351 PF03195 LOB 7.10E-44 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0911 - - - 0.0