Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0923 ATGAGCTCTACTTCACTTCTCATCAAACTCATCTTTTCCTTCCTGTTCTTAGTCTGTTTTTTCACAACTCAGGTTGTGTCTCAATCTGATGAATGTGAATCCGTAGCCAACGAATGCACTGATAAAGATAGAGCTTTACGTCTCAAGATCATCGCCATTGCCTCGATCCTCATCGCTAGTGTGATCGGTGTTTGCTCGCCTCTCGTTACGCGATCGATCCCGGCATTACACCCCGACCGAAACCTGTTTGTCATCTTGAAATCCTTTGCAGCAGGCATCATTCTTGCAACCGGATTCATGCACGTTCTTCCGGATTCCTTCGACATGCTTTGGTCAGATTGTCTGAAAGAGAATCCATGGCACAAGTTTCCCTTTTCGGGGTTTGTCGCTATGATGTCTGCGATCTTTACGTTAATGGTGGACTCTATGGCGACAAGTCTTTATACGAGGAAACATGCCGGGGTTATACCGGAGAATTCTGACCAAGAGATGCCTGTGGCCAGTGGAGGGCATTCACATGGCCACCATCATCGTGATATCAAAGAAACTGGTGCAGCTGGTTCTCAATTGTTGCGTTATCGCGTCATTGCTATGGTATTGGAACTGGGAATTGTGGTTCATTCTGTTGTGATTGGGCTTTCACTTGGAGCAACAAATGATACTTGCACTATCAAAGGTCTTGTGGCTGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGTGGCTGCATTCTTCAAGCTGAGTACAAGTTGATGAAGAAGGCAGTAATGGCATTCTTTTTCTCAGTGACAACTCCATTTGGGATAGCACTTGGGATAGGTTTGTCAAAAATATACAAGGAGAATAGTCCAACTGCTTTAATCACAGTTGGATTACTGAATGCATCATCTGCTGGTCTTTTGATCTACATGGCTTTGGTGGATCTTCTTGCTGCAGATTTCATGGGACAGAAGTTGCAAGGCAGCATTAAGCTCCAAATCAAATCCTACATGGCTGTGCTGCTGGGTGCTGGTGGCATGTCTTTGATGGCCAAATGGGCTTGA 1050 45.14 MSSTSLLIKLIFSFLFLVCFFTTQVVSQSDECESVANECTDKDRALRLKIIAIASILIASVIGVCSPLVTRSIPALHPDRNLFVILKSFAAGIILATGFMHVLPDSFDMLWSDCLKENPWHKFPFSGFVAMMSAIFTLMVDSMATSLYTRKHAGVIPENSDQEMPVASGGHSHGHHHRDIKETGAAGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKLMKKAVMAFFFSVTTPFGIALGIGLSKIYKENSPTALITVGLLNASSAGLLIYMALVDLLAADFMGQKLQGSIKLQIKSYMAVLLGAGGMSLMAKWA 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 8177614 8180098 - evm.model.ptg000005l.594 HCH3g0923 541651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0923 349 PANTHER ZINC/IRON TRANSPORTER 42 348 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
HCH3g0923 349 Pfam ZIP Zinc transporter 47 346 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH3g0923 349 NCBIfam ZIP zinc/iron transport family 36 349 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g1208 HCH-Chr10:43074435 HCH3g0923 HCH-Chr3:8177614 2.60E-99 dispersed
HCH10g1216 HCH-Chr10:43351109 HCH3g0923 HCH-Chr3:8177614 1.70E-101 dispersed
HCH2g1008 HCH-Chr2:53303618 HCH3g0923 HCH-Chr3:8177614 3.50E-56 dispersed
HCH3g0923 HCH-Chr3:8177614 HCH7g0020 HCH-Chr7:169414 3.60E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0923 K14709 - csv:101221552 557.37