Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0962 ATGGCTCCGCGTTTTCATTTCCTGGTTTTCGTCTTGATTTTTGCTTCTTTTCCTTCTGCTCGTGCCCTTACTGATGCCTCTGATGTTCAAGCTTTGCAAGTTATATACTCCTCATTGAATAGTCCTCCTCAGCTAACTGGTTGGATTGGTAGTGGTGGTGATCCATGTGCAGAGTCATGGAAAGGGGTTACTTGTGAAGGCTCCGCCGTGGTTTCCATTGAGATTTTTGGGTTAGGACTGAACGGTTCAATGGGTTATCTTCTCTCAAATCTTTTGTCATTGAGAAGTCTAGATATGAGCGATAACAGTATTCATGACACTATTCCTTATCAATTGCCACCAAACCTTACAAGCCTAAATATGGCAAAAAACAATTTAAGTGGTAATCTTCCCTATTCCCTTTCCACCATGGTCTCTCTCAATTATCTGAATATGAGTCATAATTCATTGTCCCAGTCAATAGGAGATGTTTTCACCAATCTTACTGCCCTGGGGACCCTGGATCTTTCTTTCAACAGCTTCAGCGGGGATCTTCCTAATTCCTTCAGCACATTATCCAATGTTTCTTCCCTCTTGTTGCAGAACAACCAACTGACGGGTTCTCTTAATAGTCTTATCAGTTTGCCTTTGACCACTCTAAATGTAGCAAACAATCATTTTAGTGGATGGATACCTCAAGAACTGAGTTCAATCCAAAATTTCATATCCAGTGGAAATTCATTTGATAATAGTCCCGCGCCGCCTCCACCACCATATATATCACCTCCTCCTGGCAGATCTCGCAATGGTACCAGCCATCCTGGATCTGGCACCCATACCACACCGAGTTCTAGTGAGAGCTCGCCTCACTCGGATAAAGGCTTATCGGTTTTGGCTATAGTAGGGATAGTTTTGGGTGCTGTAATTTTTGTCCTCATTGTATTAGCTGCTTTTTCTGTATACATCCAAAAGAAGAAAAGGAAGAACAACGGTCTAAGAGCTCCCAGTGGAAGGTTCTCTGTTGGGAATAGTGTGAATGCTGAAGTTCAAGAGCATAGGGTGAAAAGCATTGCTGCTGTCGCAGATCTTAAGCCCCTTCCCGCAGAAAAAATGACTGTTGAAAGATTACATGGGAAAAATGGATCTGTGAAAAGAATGAAGTCCCCTATTACTGCTACTTCTTATACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGCCAAGAATTCCTAGTTGGTGAAGGTTCTCTAGGCCGTGTCTATAAAGCAGATTTTCCAAATGGGAAGATAATGGCAATTAAAAAGATCGACAATGCAGCATTGTCACTACAGGAGGAAGACAATTTTCTTGAAGCAGTATCAAACATGTCAAGATTGAGGCACACAAATATTGTCACGCTCAATGGATATTGTGCAGAGCATGGGCAGCGTCTTCTAGTTTATGAATTCATTGGAAATGGAAGTTTACATGACATGCTCCATTTTGCTGAAGATAGTAGTACGACCCTGACTTGGAATGCACGTGTCAGGGTAGCTCTTGGAACTGCTCGAGCTTTAGAATACTTGCATGAGGTGTGCTTGCCTTCTGTTGTACATAGAAATTTGAAGACAGCAAACATATTACTCGATGAAGAGCTCAATCCTCATTTATCAGATTGTGGATTGGCTGCATTAACACCCAACACAGAACGACAGGTTTCCACCCAAATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTCGCCTTGTCAGGAATATACACTGTAAAAAGTGATGTGTACAGTTTTGGGGTGGTGATGTTGGAGTTATTGACTGGCCGAAAGCCACTTGACAGTTCCAGGGTGAGATCGGAGCAATCACTAGTTAGATGGGCTTCTCCCCAACTTCATGATATAGATGCCTTAGCTAAAATGGTAGATCCTACTTTGAATGGCATGTATCCGGCAAAATCTCTTTCACGCTTCGCTGACATTATTGCTCTGTGTGTTCAGCCTGAACCTGAATTTCGACCTCCCATGTCAGAAGTTGTGCAAGCGTTGGTACGTCTAGTGCAAAGGGCTAGTGTGGTCAAAAGGCATTCTAGTGACGAGTCTGGTTTTACTTACAAGACCCCAGATCACGAAGCAGCTGACTTACCATTTTGA 2127 42.6 MAPRFHFLVFVLIFASFPSARALTDASDVQALQVIYSSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEIFGLGLNGSMGYLLSNLLSLRSLDMSDNSIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSLSTMVSLNYLNMSHNSLSQSIGDVFTNLTALGTLDLSFNSFSGDLPNSFSTLSNVSSLLLQNNQLTGSLNSLISLPLTTLNVANNHFSGWIPQELSSIQNFISSGNSFDNSPAPPPPPYISPPPGRSRNGTSHPGSGTHTTPSSSESSPHSDKGLSVLAIVGIVLGAVIFVLIVLAAFSVYIQKKKRKNNGLRAPSGRFSVGNSVNAEVQEHRVKSIAAVADLKPLPAEKMTVERLHGKNGSVKRMKSPITATSYTVASLQSATNSFSQEFLVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEDSSTTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWASPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPDHEAADLPF 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9299332 9305745 + evm.model.ptg000005l.555 HCH3g0962 541690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0962 708 MobiDBLite consensus disorder prediction 239 284 - -
HCH3g0962 708 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
HCH3g0962 708 ProSiteProfiles Protein kinase domain profile. 400 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0962 708 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515(InterPro)
HCH3g0962 708 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 187 679 IPR046959 -
HCH3g0962 708 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 478 688 - -
HCH3g0962 708 Gene3D Transferase(Phosphotransferase) domain 1 478 702 - -
HCH3g0962 708 SUPERFAMILY Protein kinase-like (PK-like) 376 674 IPR011009 -
HCH3g0962 708 MobiDBLite consensus disorder prediction 243 257 - -
HCH3g0962 708 SUPERFAMILY L domain-like 24 233 - -
HCH3g0962 708 Pfam Leucine Rich Repeat 93 112 IPR001611 GO:0005515(InterPro)
HCH3g0962 708 Pfam Leucine Rich Repeat 210 230 IPR001611 GO:0005515(InterPro)
HCH3g0962 708 Gene3D Phosphorylase Kinase; domain 1 361 477 - -
HCH3g0962 708 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
HCH3g0962 708 CDD STKc_IRAK 406 677 - -
HCH3g0962 708 Gene3D Ribonuclease Inhibitor 24 254 IPR032675 -
HCH3g0962 708 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 365 477 - -
HCH3g0962 708 MobiDBLite consensus disorder prediction 258 284 - -
HCH3g0962 708 Pfam Protein kinase domain 404 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0962 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1042 HCH-Chr13:31155369 HCH3g0962 HCH-Chr3:9299332 3.10E-105 dispersed
HCH3g0962 HCH-Chr3:9299332 HCH4g1561 HCH-Chr4:12183257 2.70E-135 dispersed
HCH3g0962 HCH-Chr3:9299332 HCH6g0029 HCH-Chr6:457729 5.10E-150 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH4g1561 . 386 688 Strubbelig Receptor Gene Family AT1G11130 51.8 9.6e-85 311.6
HCH3g0962 . 385 678 Strubbelig Receptor Gene Family AT1G11130 52.7 3.7e-84 309.7
HCH6g0029 . 409 697 Strubbelig Receptor Gene Family AT1G11130 51.9 6.9e-83 305.4
HCH11g0581 . 5 735 Strubbelig Receptor Gene Family AT5G06820 54.9 6.2e-191 664.5
HCH7g0172 . 35 796 Strubbelig Receptor Gene Family AT4G03390 65.2 7.5e-219 757.3
HCH14g0886 . 17 739 Strubbelig Receptor Gene Family AT4G03390 54.2 5.4e-169 591.7
HCH4g1561 . 396 690 Strubbelig Receptor Gene Family AT4G03390 58.5 1.1e-92 338.2
HCH4g1561 . 6 688 Strubbelig Receptor Gene Family AT3G13065 51.5 1.2e-111 401.0
HCH6g0029 . 30 702 Strubbelig Receptor Gene Family AT1G78980 50.5 6.4e-145 511.5
HCH4g1561 . 22 693 Strubbelig Receptor Gene Family AT1G78980 52.1 4.5e-130 462.2
HCH6g0029 . 1 726 Strubbelig Receptor Gene Family AT1G53730 60.2 2.0e-210 729.2
HCH4g1561 . 1 701 Strubbelig Receptor Gene Family AT1G53730 63.4 8.2e-196 680.6
HCH3g0962 . 24 701 Strubbelig Receptor Gene Family AT1G53730 53.5 8.9e-150 527.7
HCH6g0029 . 11 720 Strubbelig Receptor Gene Family AT3G14350 53.4 1.0e-190 663.7
HCH4g1561 . 6 699 Strubbelig Receptor Gene Family AT3G14350 57.0 3.6e-172 602.1
HCH3g0962 . 234 708 Strubbelig Receptor Gene Family AT4G22130 69.4 5.7e-176 614.4
HCH4g1561 . 394 707 Strubbelig Receptor Gene Family AT4G22130 66.8 5.4e-118 421.8
HCH6g0029 . 388 716 Strubbelig Receptor Gene Family AT4G22130 62.5 1.3e-116 417.2
HCH7g0172 . 480 788 Strubbelig Receptor Gene Family AT4G22130 60.8 8.6e-108 387.9
HCH14g0886 . 415 739 Strubbelig Receptor Gene Family AT4G22130 53.9 3.0e-100 362.8
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81422 PF00069 Pkinase 1.10E-43 CL0016 HCH PK