Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0962 ATGGCTCCGCGTTTTCATTTCCTGGTTTTCGTCTTGATTTTTGCTTCTTTTCCTTCTGCTCGTGCCCTTACTGATGCCTCTGATGTTCAAGCTTTGCAAGTTATATACTCCTCATTGAATAGTCCTCCTCAGCTAACTGGTTGGATTGGTAGTGGTGGTGATCCATGTGCAGAGTCATGGAAAGGGGTTACTTGTGAAGGCTCCGCCGTGGTTTCCATTGAGATTTTTGGGTTAGGACTGAACGGTTCAATGGGTTATCTTCTCTCAAATCTTTTGTCATTGAGAAGTCTAGATATGAGCGATAACAGTATTCATGACACTATTCCTTATCAATTGCCACCAAACCTTACAAGCCTAAATATGGCAAAAAACAATTTAAGTGGTAATCTTCCCTATTCCCTTTCCACCATGGTCTCTCTCAATTATCTGAATATGAGTCATAATTCATTGTCCCAGTCAATAGGAGATGTTTTCACCAATCTTACTGCCCTGGGGACCCTGGATCTTTCTTTCAACAGCTTCAGCGGGGATCTTCCTAATTCCTTCAGCACATTATCCAATGTTTCTTCCCTCTTGTTGCAGAACAACCAACTGACGGGTTCTCTTAATAGTCTTATCAGTTTGCCTTTGACCACTCTAAATGTAGCAAACAATCATTTTAGTGGATGGATACCTCAAGAACTGAGTTCAATCCAAAATTTCATATCCAGTGGAAATTCATTTGATAATAGTCCCGCGCCGCCTCCACCACCATATATATCACCTCCTCCTGGCAGATCTCGCAATGGTACCAGCCATCCTGGATCTGGCACCCATACCACACCGAGTTCTAGTGAGAGCTCGCCTCACTCGGATAAAGGCTTATCGGTTTTGGCTATAGTAGGGATAGTTTTGGGTGCTGTAATTTTTGTCCTCATTGTATTAGCTGCTTTTTCTGTATACATCCAAAAGAAGAAAAGGAAGAACAACGGTCTAAGAGCTCCCAGTGGAAGGTTCTCTGTTGGGAATAGTGTGAATGCTGAAGTTCAAGAGCATAGGGTGAAAAGCATTGCTGCTGTCGCAGATCTTAAGCCCCTTCCCGCAGAAAAAATGACTGTTGAAAGATTACATGGGAAAAATGGATCTGTGAAAAGAATGAAGTCCCCTATTACTGCTACTTCTTATACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGCCAAGAATTCCTAGTTGGTGAAGGTTCTCTAGGCCGTGTCTATAAAGCAGATTTTCCAAATGGGAAGATAATGGCAATTAAAAAGATCGACAATGCAGCATTGTCACTACAGGAGGAAGACAATTTTCTTGAAGCAGTATCAAACATGTCAAGATTGAGGCACACAAATATTGTCACGCTCAATGGATATTGTGCAGAGCATGGGCAGCGTCTTCTAGTTTATGAATTCATTGGAAATGGAAGTTTACATGACATGCTCCATTTTGCTGAAGATAGTAGTACGACCCTGACTTGGAATGCACGTGTCAGGGTAGCTCTTGGAACTGCTCGAGCTTTAGAATACTTGCATGAGGTGTGCTTGCCTTCTGTTGTACATAGAAATTTGAAGACAGCAAACATATTACTCGATGAAGAGCTCAATCCTCATTTATCAGATTGTGGATTGGCTGCATTAACACCCAACACAGAACGACAGGTTTCCACCCAAATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTCGCCTTGTCAGGAATATACACTGTAAAAAGTGATGTGTACAGTTTTGGGGTGGTGATGTTGGAGTTATTGACTGGCCGAAAGCCACTTGACAGTTCCAGGGTGAGATCGGAGCAATCACTAGTTAGATGGGCTTCTCCCCAACTTCATGATATAGATGCCTTAGCTAAAATGGTAGATCCTACTTTGAATGGCATGTATCCGGCAAAATCTCTTTCACGCTTCGCTGACATTATTGCTCTGTGTGTTCAGCCTGAACCTGAATTTCGACCTCCCATGTCAGAAGTTGTGCAAGCGTTGGTACGTCTAGTGCAAAGGGCTAGTGTGGTCAAAAGGCATTCTAGTGACGAGTCTGGTTTTACTTACAAGACCCCAGATCACGAAGCAGCTGACTTACCATTTTGA 2127 42.6 MAPRFHFLVFVLIFASFPSARALTDASDVQALQVIYSSLNSPPQLTGWIGSGGDPCAESWKGVTCEGSAVVSIEIFGLGLNGSMGYLLSNLLSLRSLDMSDNSIHDTIPYQLPPNLTSLNMAKNNLSGNLPYSLSTMVSLNYLNMSHNSLSQSIGDVFTNLTALGTLDLSFNSFSGDLPNSFSTLSNVSSLLLQNNQLTGSLNSLISLPLTTLNVANNHFSGWIPQELSSIQNFISSGNSFDNSPAPPPPPYISPPPGRSRNGTSHPGSGTHTTPSSSESSPHSDKGLSVLAIVGIVLGAVIFVLIVLAAFSVYIQKKKRKNNGLRAPSGRFSVGNSVNAEVQEHRVKSIAAVADLKPLPAEKMTVERLHGKNGSVKRMKSPITATSYTVASLQSATNSFSQEFLVGEGSLGRVYKADFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGNGSLHDMLHFAEDSSTTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDCGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWASPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFTYKTPDHEAADLPF 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 9299332 9305745 + evm.model.ptg000005l.555 HCH3g0962 541690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0962 708 MobiDBLite consensus disorder prediction 239 284 - -
HCH3g0962 708 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
HCH3g0962 708 ProSiteProfiles Protein kinase domain profile. 400 677 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g0962 708 Pfam Leucine rich repeat 114 173 IPR001611 GO:0005515(InterPro)
HCH3g0962 708 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 187 679 IPR046959 -
HCH3g0962 708 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 478 688 - -
HCH3g0962 708 Gene3D Transferase(Phosphotransferase) domain 1 478 702 - -
HCH3g0962 708 SUPERFAMILY Protein kinase-like (PK-like) 376 674 IPR011009 -
HCH3g0962 708 MobiDBLite consensus disorder prediction 243 257 - -
HCH3g0962 708 SUPERFAMILY L domain-like 24 233 - -
HCH3g0962 708 Pfam Leucine Rich Repeat 93 112 IPR001611 GO:0005515(InterPro)
HCH3g0962 708 Pfam Leucine Rich Repeat 210 230 IPR001611 GO:0005515(InterPro)
HCH3g0962 708 Gene3D Phosphorylase Kinase; domain 1 361 477 - -
HCH3g0962 708 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
HCH3g0962 708 CDD STKc_IRAK 406 677 - -
HCH3g0962 708 Gene3D Ribonuclease Inhibitor 24 254 IPR032675 -
HCH3g0962 708 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 365 477 - -
HCH3g0962 708 MobiDBLite consensus disorder prediction 258 284 - -
HCH3g0962 708 Pfam Protein kinase domain 404 672 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g1042 HCH-Chr13:31155369 HCH3g0962 HCH-Chr3:9299332 3.10E-105 dispersed
HCH3g0962 HCH-Chr3:9299332 HCH4g1561 HCH-Chr4:12183257 2.70E-135 dispersed
HCH3g0962 HCH-Chr3:9299332 HCH6g0029 HCH-Chr6:457729 5.10E-150 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81422 PF00069 Pkinase 1.10E-43 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0962 - - - 0.0