Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g0991 | ATGACTAGAAAGAAGGTTAAACTTGCATATATCAGTAATGATACAGCAAGAAAAGCAACCTTCAAGAAAAGGAAGAGGGGTTTGTTGAAGAAAGTGAGTGAACTCAGCACCCTATGTGGGATTCAGGCCTGTGCAATCATCTACAGTCCCTACAATTCTCAGCCTGAGGTCTGGCCTTCTGCTCTTGGAGTCCAACGTGTGCTTTCTCATTTCAGGAACATGCCTGAGATGGAGCAGAGCAAGAAAATGGTTAACCAAGAGACTTTTCTGAGGCAGCGGATCGGCAAAGCTAACGAACAGCTGAAGCGGCATCAAAGGGATAACCGGGAGAAGGAGATGACTAGAGTTATGTTTCAAAGCCTTATTGGAAGAGGGCCCCCAGGTTTGAACATGATGGATTTGAATGATATTGGGTGGTTGATCGATCAGAATCTGATGGCCATTTGCAAGAGGATGGAGTTGCTTAAATGTGCAGATCAGAATCAAGTGGCAGTCGCACCGTATGTGCCTGCTATGCCGCTGCTTGGAGATGGAACTGACCTGCAGAGGGATGATGCAGCGCCACAACTGGCTGCAGATAACCAGGCTTTCGAGTCGAGCATTGGGCCTGTGCCGATGGAACCATGGTTCATGGACTTAATGAGTCCATCAGATGACATTGGATTTGTTGCAGATGATGGGGTTCTACCTTTTGGAGATGAAAACTTTAATGCTATTTGGTCCAATTCCCCTTTCCCTTGA | 741 | 46.56 | MTRKKVKLAYISNDTARKATFKKRKRGLLKKVSELSTLCGIQACAIIYSPYNSQPEVWPSALGVQRVLSHFRNMPEMEQSKKMVNQETFLRQRIGKANEQLKRHQRDNREKEMTRVMFQSLIGRGPPGLNMMDLNDIGWLIDQNLMAICKRMELLKCADQNQVAVAPYVPAMPLLGDGTDLQRDDAAPQLAADNQAFESSIGPVPMEPWFMDLMSPSDDIGFVADDGVLPFGDENFNAIWSNSPFP | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 10492469 | 10493209 | + | evm.model.ptg000005l.526 | HCH3g0991 | 541719 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g0991 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 49 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH3g0991 | 246 | PANTHER | MADS BOX PROTEIN | 1 | 115 | - | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| HCH3g0991 | 246 | FunFam | agamous-like MADS-box protein AGL80 | 13 | 97 | - | - | |
| HCH3g0991 | 246 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro) | |
| HCH3g0991 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 52 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH3g0991 | 246 | SUPERFAMILY | SRF-like | 1 | 85 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH3g0991 | 246 | Coils | Coil | 94 | 114 | - | - | |
| HCH3g0991 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH3g0991 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH3g0991 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH3g0991 | 246 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH3g0991 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g0991 | HCH-Chr3:10492469 | HCH5g0698 | HCH-Chr5:5053400 | 8.40E-84 | dispersed | |
| HCH3g0991 | HCH-Chr3:10492469 | HCH2g0254 | HCH-Chr2:38619211 | 8.90E-09 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33356 | PF00319 | SRF-TF | 5.90E-18 | No_clan | HCH | TF |
Pathway information