Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g0991 ATGACTAGAAAGAAGGTTAAACTTGCATATATCAGTAATGATACAGCAAGAAAAGCAACCTTCAAGAAAAGGAAGAGGGGTTTGTTGAAGAAAGTGAGTGAACTCAGCACCCTATGTGGGATTCAGGCCTGTGCAATCATCTACAGTCCCTACAATTCTCAGCCTGAGGTCTGGCCTTCTGCTCTTGGAGTCCAACGTGTGCTTTCTCATTTCAGGAACATGCCTGAGATGGAGCAGAGCAAGAAAATGGTTAACCAAGAGACTTTTCTGAGGCAGCGGATCGGCAAAGCTAACGAACAGCTGAAGCGGCATCAAAGGGATAACCGGGAGAAGGAGATGACTAGAGTTATGTTTCAAAGCCTTATTGGAAGAGGGCCCCCAGGTTTGAACATGATGGATTTGAATGATATTGGGTGGTTGATCGATCAGAATCTGATGGCCATTTGCAAGAGGATGGAGTTGCTTAAATGTGCAGATCAGAATCAAGTGGCAGTCGCACCGTATGTGCCTGCTATGCCGCTGCTTGGAGATGGAACTGACCTGCAGAGGGATGATGCAGCGCCACAACTGGCTGCAGATAACCAGGCTTTCGAGTCGAGCATTGGGCCTGTGCCGATGGAACCATGGTTCATGGACTTAATGAGTCCATCAGATGACATTGGATTTGTTGCAGATGATGGGGTTCTACCTTTTGGAGATGAAAACTTTAATGCTATTTGGTCCAATTCCCCTTTCCCTTGA 741 46.56 MTRKKVKLAYISNDTARKATFKKRKRGLLKKVSELSTLCGIQACAIIYSPYNSQPEVWPSALGVQRVLSHFRNMPEMEQSKKMVNQETFLRQRIGKANEQLKRHQRDNREKEMTRVMFQSLIGRGPPGLNMMDLNDIGWLIDQNLMAICKRMELLKCADQNQVAVAPYVPAMPLLGDGTDLQRDDAAPQLAADNQAFESSIGPVPMEPWFMDLMSPSDDIGFVADDGVLPFGDENFNAIWSNSPFP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10492469 10493209 + evm.model.ptg000005l.526 HCH3g0991 541719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g0991 246 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0991 246 PANTHER MADS BOX PROTEIN 1 115 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH3g0991 246 FunFam agamous-like MADS-box protein AGL80 13 97 - -
HCH3g0991 246 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981(InterPro)|GO:0000987(InterPro)|GO:0045944(InterPro)
HCH3g0991 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0991 246 SUPERFAMILY SRF-like 1 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0991 246 Coils Coil 94 114 - -
HCH3g0991 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0991 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0991 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0991 246 Gene3D - 13 97 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH3g0991 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g0991 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0991 HCH-Chr3:10492469 HCH5g0698 HCH-Chr5:5053400 8.40E-84 dispersed
HCH3g0991 HCH-Chr3:10492469 HCH2g0254 HCH-Chr2:38619211 8.90E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
HCH3g0068 . 1 237 Type I MADS-box Gene Family AT2G03060 53.3 4.4e-63 238.8
HCH11g0934 . 1 165 Type I MADS-box Gene Family AT5G60440 60.7 7.4e-50 194.5
HCH8g0017 . 1 156 Type I MADS-box Gene Family AT5G48670 71.3 1.2e-56 217.2
HCH5g0698 . 1 155 Type I MADS-box Gene Family AT5G48670 69.9 1.7e-55 213.4
HCH3g0991 . 1 174 Type I MADS-box Gene Family AT5G48670 61.1 1.3e-52 203.8
HCH11g0934 . 4 159 Type I MADS-box Gene Family AT2G24840 53.5 1.3e-37 153.7
HCH13g1262 . 2 212 Type I MADS-box Gene Family AT1G77950 54.9 2.1e-53 206.1
HCH13g1262 . 2 284 Type I MADS-box Gene Family AT1G77980 50.7 1.0e-63 240.7
HCH5g0698 . 1 148 Type I MADS-box Gene Family AT3G05860 54.7 6.0e-37 151.4
HCH8g0017 . 1 148 Type I MADS-box Gene Family AT3G05860 54.0 7.9e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33356 PF00319 SRF-TF 5.90E-18 No_clan HCH TF