Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1019 ATGGACTCTGATGATGTTAACCAATCCTTGCTTCCGAAGCCGGGTGACTTCATCAAGAAGAATGTTCTCCAGAGAAGAAAACCTAGCCATTATAGTAGTAATTCACCTTCACTAGCTAAAGATAATCCAAGTGGTCATGAAGTTTCTGATGAATCCATGCTTGGTAGACAACAATTTAGTTTTAAGCAAGTGTGTGTTTTGCTGGCTACTTATTTGGGATGCGGGACACTTTGCTTCTTTCTCATTGGGAGTCAGATCAGCGGAAAGAAAACGAACGGGATTGTCGATGCCGTGTATTTCTGTGTTGTGACAATGACCACTGTTGGATATGGAGATCTTGTTCCTAGTAGCATAGTTGCAAAACTACTTGCATGTGCCTATGTTTTTACTGGAATGATTCTTTGTGGGATAACTCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGCACATGCGTGATAAGGTCAGTTCCAGTGAACTCCTTAAGGAGTCTGAGACTCACAAACTCATGTACAAATTCATTTTCACTGGAATCCTCCTTTTGGTTCTCGTTATTGTTGGAACTCTTTTCTTAACCGTGGTCGAGAAGTTTGAGTTCACGGACGCCTTTTATTGTGTCTGTTCCACAATCACCACTCTTGGCTATGGGGATGAAAGCTTCTCTACTGCAGCTGGTCGTGTTTTTGCTGTAATTTGGATATTGAGCAGTACTATCTGCTTAGCACAGTTCTTTCTGTATCTTACGGAATTACGCACGGAAAAGAGACAGAGATCACTGGTGAAATGGGTCCTCACTCGAAATCTCACATTCTCAGATCTTGAAGAAGCTGACCTTGATCATGATAAAGTAGTTAGTGCTGCAGAATTTGTTATATATAAGCTGAAGGAAATGGGGAAGATCAATAGGGAAGATGTTGCACCCATAATCGAAACTTTTAAGAAGCTCGATGTTGATCAATCAGGATCTTTAACCGAAGCTGATTTAGTAATTTCACAGTCATAG 1029 41.01 MDSDDVNQSLLPKPGDFIKKNVLQRRKPSHYSSNSPSLAKDNPSGHEVSDESMLGRQQFSFKQVCVLLATYLGCGTLCFFLIGSQISGKKTNGIVDAVYFCVVTMTTVGYGDLVPSSIVAKLLACAYVFTGMILCGITLSKAADYIVEKQEILLVKAMHMRDKVSSSELLKESETHKLMYKFIFTGILLLVLVIVGTLFLTVVEKFEFTDAFYCVCSTITTLGYGDESFSTAAGRVFAVIWILSSTICLAQFFLYLTELRTEKRQRSLVKWVLTRNLTFSDLEEADLDHDKVVSAAEFVIYKLKEMGKINREDVAPIIETFKKLDVDQSGSLTEADLVISQS 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13636353 13637519 + evm.model.ptg000005l.498 HCH3g1019 541747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1019 342 MobiDBLite consensus disorder prediction 27 42 - -
HCH3g1019 342 PRINTS Two pore domain K+ channel signature 220 229 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH3g1019 342 PRINTS Two pore domain K+ channel signature 103 131 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
HCH3g1019 342 Gene3D - 280 341 - -
HCH3g1019 342 Gene3D - 57 152 - -
HCH3g1019 342 ProSitePatterns EF-hand calcium-binding domain. 325 337 IPR018247 -
HCH3g1019 342 Pfam Ion channel 188 258 IPR013099 -
HCH3g1019 342 Pfam Ion channel 69 147 IPR013099 -
HCH3g1019 342 SUPERFAMILY Voltage-gated potassium channels 176 277 - -
HCH3g1019 342 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 94 287 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
HCH3g1019 342 Gene3D - 157 270 - -
HCH3g1019 342 MobiDBLite consensus disorder prediction 1 50 - -
HCH3g1019 342 SUPERFAMILY Voltage-gated potassium channels 59 163 - -
HCH3g1019 342 SUPERFAMILY EF-hand 281 337 IPR011992 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1264 HCH-Chr12:13560885 HCH3g1019 HCH-Chr3:13636353 4.60E-99 dispersed
HCH14g1043 HCH-Chr14:37562885 HCH3g1019 HCH-Chr3:13636353 4.50E-53 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1019 K05389 - csv:101214791 483.796