Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g1019 | ATGGACTCTGATGATGTTAACCAATCCTTGCTTCCGAAGCCGGGTGACTTCATCAAGAAGAATGTTCTCCAGAGAAGAAAACCTAGCCATTATAGTAGTAATTCACCTTCACTAGCTAAAGATAATCCAAGTGGTCATGAAGTTTCTGATGAATCCATGCTTGGTAGACAACAATTTAGTTTTAAGCAAGTGTGTGTTTTGCTGGCTACTTATTTGGGATGCGGGACACTTTGCTTCTTTCTCATTGGGAGTCAGATCAGCGGAAAGAAAACGAACGGGATTGTCGATGCCGTGTATTTCTGTGTTGTGACAATGACCACTGTTGGATATGGAGATCTTGTTCCTAGTAGCATAGTTGCAAAACTACTTGCATGTGCCTATGTTTTTACTGGAATGATTCTTTGTGGGATAACTCTTAGCAAGGCAGCCGATTACATTGTGGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGCACATGCGTGATAAGGTCAGTTCCAGTGAACTCCTTAAGGAGTCTGAGACTCACAAACTCATGTACAAATTCATTTTCACTGGAATCCTCCTTTTGGTTCTCGTTATTGTTGGAACTCTTTTCTTAACCGTGGTCGAGAAGTTTGAGTTCACGGACGCCTTTTATTGTGTCTGTTCCACAATCACCACTCTTGGCTATGGGGATGAAAGCTTCTCTACTGCAGCTGGTCGTGTTTTTGCTGTAATTTGGATATTGAGCAGTACTATCTGCTTAGCACAGTTCTTTCTGTATCTTACGGAATTACGCACGGAAAAGAGACAGAGATCACTGGTGAAATGGGTCCTCACTCGAAATCTCACATTCTCAGATCTTGAAGAAGCTGACCTTGATCATGATAAAGTAGTTAGTGCTGCAGAATTTGTTATATATAAGCTGAAGGAAATGGGGAAGATCAATAGGGAAGATGTTGCACCCATAATCGAAACTTTTAAGAAGCTCGATGTTGATCAATCAGGATCTTTAACCGAAGCTGATTTAGTAATTTCACAGTCATAG | 1029 | 41.01 | MDSDDVNQSLLPKPGDFIKKNVLQRRKPSHYSSNSPSLAKDNPSGHEVSDESMLGRQQFSFKQVCVLLATYLGCGTLCFFLIGSQISGKKTNGIVDAVYFCVVTMTTVGYGDLVPSSIVAKLLACAYVFTGMILCGITLSKAADYIVEKQEILLVKAMHMRDKVSSSELLKESETHKLMYKFIFTGILLLVLVIVGTLFLTVVEKFEFTDAFYCVCSTITTLGYGDESFSTAAGRVFAVIWILSSTICLAQFFLYLTELRTEKRQRSLVKWVLTRNLTFSDLEEADLDHDKVVSAAEFVIYKLKEMGKINREDVAPIIETFKKLDVDQSGSLTEADLVISQS | 342 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13636353 | 13637519 | + | evm.model.ptg000005l.498 | HCH3g1019 | 541747 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g1019 | 342 | MobiDBLite | consensus disorder prediction | 27 | 42 | - | - | |
HCH3g1019 | 342 | PRINTS | Two pore domain K+ channel signature | 220 | 229 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
HCH3g1019 | 342 | PRINTS | Two pore domain K+ channel signature | 103 | 131 | IPR003280 | GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro) | |
HCH3g1019 | 342 | Gene3D | - | 280 | 341 | - | - | |
HCH3g1019 | 342 | Gene3D | - | 57 | 152 | - | - | |
HCH3g1019 | 342 | ProSitePatterns | EF-hand calcium-binding domain. | 325 | 337 | IPR018247 | - | |
HCH3g1019 | 342 | Pfam | Ion channel | 188 | 258 | IPR013099 | - | |
HCH3g1019 | 342 | Pfam | Ion channel | 69 | 147 | IPR013099 | - | |
HCH3g1019 | 342 | SUPERFAMILY | Voltage-gated potassium channels | 176 | 277 | - | - | |
HCH3g1019 | 342 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 94 | 287 | IPR003280 | GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER) | |
HCH3g1019 | 342 | Gene3D | - | 157 | 270 | - | - | |
HCH3g1019 | 342 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
HCH3g1019 | 342 | SUPERFAMILY | Voltage-gated potassium channels | 59 | 163 | - | - | |
HCH3g1019 | 342 | SUPERFAMILY | EF-hand | 281 | 337 | IPR011992 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1264 | HCH-Chr12:13560885 | HCH3g1019 | HCH-Chr3:13636353 | 4.60E-99 | dispersed | |
HCH14g1043 | HCH-Chr14:37562885 | HCH3g1019 | HCH-Chr3:13636353 | 4.50E-53 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g1019 | K05389 | - | csv:101214791 | 483.796 |