Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1038 ATGGCCTCAAAGTTGGGTTCTAAAGCTTCTCTAAAAGAACCCAAGGGGAAAACCGATGTTCAAACAACTGATGCAAGTGATCTAAGGCCTGTATCTCTACAGACTTCATTGGCAACCAAGCTCAGTTTAGTTACTTCTGGAGATGTATCGAAATCCACACATAGAACCTTGAATCAGGCTACTTCGGTTGAAGCATCCAATGCTAAATCATCAAATTCTAATTTCAAAGAATCTGCTGAATCTGATAATCAAAAAGTCAGAGAAAGCTCCTCAACATCTGACCCTAAGATGTTGATTGAAGGAGATCGTGCTCTTACTGGGACTGGCAGCTTAGAGGAGGGCTCTATTGACCAAGAGAAGAAAACATCAGATTGTGGGTGTGGGAAGGATAGTTCTGTTTCTGCCAAAGTTAGTGATGGGACAAACAGTCTAGCCAAGACCAGTGGAAGTGGTAAAATTAGTGAACGTGTTGAATTCGTTGAGAGTGGAAAGAGCAGTGTGTGTAGAGGAAGCACAAGTAGTGATATCAGTGATGAAAGTACCTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGTTAAAGATGGAATGTTGGGATTAGGTCATTTTAGACTATTAAAGAGATTGGGTTGTGGGGATATTGGAAGTGTCTATCTATCGGAGTTGAGTGGCACTAAATGTTATTTTGCAATGAAGGTCATGGACAAAGGGTCTCTAGCTAGTCGTAAGAAGTTGCTTCGTGCTCAGACAGAAAGAGAAATATTGCAATCTCTTGATCATCCCTTCCTTCCCACATTATATAGCCATTTTGAGACTGATAAGTTCTCATGCTTAGTGATGGAGTTCTGCCCAGGAGGAGACTTGCACGGTTTAAGGCAAAGACAGCCAGGGAAGCATTTTCCTGAGCATGCAGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAATACCTTCACATGCTTGGGATTGTATACCGTGACCTTAAGCCTGAGAATGTTCTTGTCAGGGAAGATGGACATATAATGCTTTCGGACTTTGACCTTTCCCTACGATGTACTGTTAGTCCAACTTTGGTGAAGGGCTCGTGTAATGAGTCTGAAACCTTGAGAAAGAATCCCGCTTATTGTGTCCAGCCAGCTTGCATTCAACCTTCCTGCATCCAGCCATCCTGTGTAGCTCCCACAACATGCTTCACTCCCCGATTTTTTTCTAGCAAGTCGAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACGCCGTTGCCAGAGCTCATTGCAGAGCCTACAGAGGCCAGGTCCATGTCATTTGTTGGTACACATGAGTACCTGGCACCAGAGATCATTAAAGGTGAAGGTCATGGAAGTGCCGTCGACTGGTGGACTTTCGGGATCTTCCTATATGAACTATTGTTTGGTAAGACTCCTTTCAAGGGATCTGGGAATCGAGCCACGTTGTTCAACGTTGTTGGCCAGCCTCTTCGGTTTCCTGAATCACCAGTTGTCAGCTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGGTTAGCTTACAAAAGAGGTGCAACTGAGATCAAGCAACACCCCTTCTTCGAAGGTGTTAATTGGGCATTGATACGATGTGCTTCGCCACCTGAGGTACCCAAACCTGTTGAGATTGAGAGGATACCCGTGCCAGCAGCTCCAGTCACTGTTAAAGCTGCTGTGACTAGACCTGGTCCAGATTCCAAATCATCTGATAATTATCTTGAGTTTGATTTCTTTTAG 1839 44.26 MASKLGSKASLKEPKGKTDVQTTDASDLRPVSLQTSLATKLSLVTSGDVSKSTHRTLNQATSVEASNAKSSNSNFKESAESDNQKVRESSSTSDPKMLIEGDRALTGTGSLEEGSIDQEKKTSDCGCGKDSSVSAKVSDGTNSLAKTSGSGKISERVEFVESGKSSVCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRVKDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYSHFETDKFSCLVMEFCPGGDLHGLRQRQPGKHFPEHAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKGSCNESETLRKNPAYCVQPACIQPSCIQPSCVAPTTCFTPRFFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPVPAAPVTVKAAVTRPGPDSKSSDNYLEFDFF 612
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14475731 14478227 - evm.model.ptg000005l.479 HCH3g1038 541766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1038 612 SUPERFAMILY Protein kinase-like (PK-like) 193 587 IPR011009 -
HCH3g1038 612 SMART serkin_6 218 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1038 612 PANTHER FLIPPASE KINASE 1-RELATED 82 576 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH3g1038 612 CDD STKc_phototropin_like 217 578 - -
HCH3g1038 612 ProSiteProfiles Protein kinase domain profile. 218 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1038 612 MobiDBLite consensus disorder prediction 1 149 - -
HCH3g1038 612 Pfam Protein kinase domain 452 555 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1038 612 Pfam Protein kinase domain 219 370 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1038 612 MobiDBLite consensus disorder prediction 23 79 - -
HCH3g1038 612 Gene3D Phosphorylase Kinase; domain 1 211 303 - -
HCH3g1038 612 FunFam Serine/threonine-protein kinase D6PK-like 216 301 - -
HCH3g1038 612 FunFam Serine/threonine-protein kinase AGC1-7 448 573 - -
HCH3g1038 612 MobiDBLite consensus disorder prediction 134 149 - -
HCH3g1038 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g1038 612 Gene3D Transferase(Phosphotransferase) domain 1 304 572 - -
HCH3g1038 612 FunFam serine/threonine-protein kinase D6PK-like 302 369 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1251 HCH-Chr2:54821396 HCH3g1038 HCH-Chr3:14475731 4.00E-149 dispersed
HCH3g1038 HCH-Chr3:14475731 HCH7g0369 HCH-Chr7:2662668 4.10E-87 dispersed
HCH10g0432 HCH-Chr10:3449487 HCH3g1038 HCH-Chr3:14475731 2.50E-119 transposed
HCH14g0100 HCH-Chr14:19151352 HCH3g1038 HCH-Chr3:14475731 3.80E-153 transposed
HCH6g0583 HCH-Chr6:34566752 HCH3g1038 HCH-Chr3:14475731 1.90E-95 transposed
HCH6g0968 HCH-Chr6:44503937 HCH3g1038 HCH-Chr3:14475731 1.00E-182 transposed
HCH9g0115 HCH-Chr9:603573 HCH3g1038 HCH-Chr3:14475731 1.10E-197 transposed
HCH14g0744 HCH-Chr14:35712754 HCH3g1038 HCH-Chr3:14475731 4.30E-246 wgd
HCH3g1038 HCH-Chr3:14475731 HCH6g0888 HCH-Chr6:43684662 7.90E-224 wgd
HCH3g1038 HCH-Chr3:14475731 HCH9g0508 HCH-Chr9:3243154 8.90E-151 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81423 PF00069 Pkinase 1.70E-36 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1038 K08286 - csv:101213662 981.859