Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1044 ATGGGGGTCTCAAAGTTTTCTTCCATTCTTTTCTTCTCCTCCTTCGTTATCTTCTCTCAGTTCATAACACCTAGTTTTGCTGCTAAAAAGTCCTATGTTGTATTGTTGGGATCTCACTCCCATGGATTAGAAGTTTCAGAAGCAGATCTTCAACGTGTCACCGATTCCCATTATGAACTCCTTGGATCTTTCTTGGGCAGTACTGAGAAGGCGAAAGATGCTATATTTTACTCTTACAAGAACCATATAAATGGATTCGCTGCAGTCCTCGAGGAGGAAGAGGCTTTGGAGCTTGCAAGGCATCCGGAAGTTGCATCGGTTTTGCCAAACCAAGCAAGAAAATTACATACAACCCATTCATGGGATTTCATGGACATGGAAAGGAATGGTGTAGTTCCTCGTGCTTCTCTATGGAAGAGAGCCAGATTTGGAGAAGACTCCATTATTGCCAATCTCGACACTGGTGTGTGGCCTGAATCAAAGAGCTTCAGTGATAAGGGGATAACTAAACCAATCCCAGCAAAATGGAAAGGACGCTGCGTGAATAACACTGCTGATGGAGTTCCTTGCAATAGGAAGCTAATTGGAGCCAAATACTACAACAAGGGCTATATCGCCTACATCATTTCACAAAACTCTTCATCCGATCTCTCTTTCGTCATCAACTCTACCAGAGACTACGAAGGCCACGGCTCCCACACACTATCCACCGCCGGGGGCAACTTCGTTCGGGGAGCCAGCGTCTTCGGTTCTGGATTAGGAACTGCTAAAGGAGGATCTCCTAAAGCTAGAGTTGCCTCTTACAAGGTCTGCTGGCCTACACGTGAAGGCGGCTGCTTCGATTCCGATATCATTCAAGCTTTCGACGATGCGATTCATGATGGAGTTGATGTCCTTTCTCTCTCACTTGGTGGAGATCCCTCTGCTTACAGTGATGACGGTCTTGCCATTGCCGCTTTTCACGCTGTTAAGAAAGGCATCCCCGTCGTTTGCTCCGCCGGCAATTCAGGTCCAGAACCAGGATCTGTCTCCAATTCTGCCCCTTGGATATTAACTGTCGGAGCCAGCACTTTGGACCGTGAGTTCCAAGCTATGGTTGAACTAAAAAACGGCAAACGCTTTAAGGGTTCTAGCCTTTCAAAACCTTTGCCAGAAGATAAATACTATCCATTAATAAGCGGAGCGCAGGCGAAAGCGGCAAATGCATCGGCGGAGGACGCTATGCTTTGCTTGCCTGACACTTTGGATCATGCAAAGGCCAAGGGGAAGATAGTTGCATGTTTAAGAGGAGAAACCGCGAGAGTTGATAAAGGAGAACAAGTAAATCTTGCTGGAGGCGTTGGAATGATTCTATGCAATGACAAGCTTAGTGGTTTTGAAACCATTGCTGATCTTCATGTACTTCCTGCTTCCCATATTAATTATGAAGATGGCGTTGCTGTATTTTCCTACATCAATTCCACCAAGAATCCTCTGGCTTATTTGATACCACCGACGGCGATAGTACACACCAAGCCTGCTCCGACTATGGCTGCCTTCTCCTCTAGAGGACCCAACACTATCACTCCTCAGATTATCAAGCCGGATGTCACCGCACCTGGTGTAAACATTATAGCTGCATATTCCGAAGCAATAAGCCCGACAGAAGAACCCTTTGACAAAAGAAAGGTTCCTTTCATCACCATGTCAGGCACCTCCATGTCCTGCCCTCATGTCTCTGGAGTTGTCGGACTTCTCAGAACTCTCCATCCTAAGTGGAGCCCCGCGGCCATTAAATCCGCCATCATGACATCCGCTAGAATAAGAGACAACACAAAGAAACCAATGCGGGACGGCGGCTCAGTCGATCTCGGTAAAGCAAACCCCTTCAGTTACGGTTCCGGCCACATACGACCAAACGGAGCGATGGATCCAGGGTTGGTTTATGACCTAAACACCAAAGATTACTTGAACTTTCTATGCGCCATTGGATACGATGAGGAAAAGATAAGACTGTTCTCAGATGGTCCATACAAATGTCCAGCTTCAGCAAGTCTTTTGAACTTCAATTACCCTTCAATAGCAGTGGAAAACATGCCTGCTAAAGTAACGGTCACAAGAAGACTGAAGAACGTGGGGCAGCCAGGCGTGTATAGAGCAAGAGTTCGTCAACCGGAGGGAGTTAAAGTGACGGTGAAGCCAAGAGTGTTGAAATTCGACCATGTTGGGCAAGAGAAGACCTTTAAGATGACGCTGTCGGGAGCTGTGGAGAAGAACTTTGTAACTGATGGCACGCTCATTTGGACTGATGGCAAGCACTTTGTTAGGAGTCCGATTGTTGTTTCGTCTGGCTCATTTTGA 2340 46.75 MGVSKFSSILFFSSFVIFSQFITPSFAAKKSYVVLLGSHSHGLEVSEADLQRVTDSHYELLGSFLGSTEKAKDAIFYSYKNHINGFAAVLEEEEALELARHPEVASVLPNQARKLHTTHSWDFMDMERNGVVPRASLWKRARFGEDSIIANLDTGVWPESKSFSDKGITKPIPAKWKGRCVNNTADGVPCNRKLIGAKYYNKGYIAYIISQNSSSDLSFVINSTRDYEGHGSHTLSTAGGNFVRGASVFGSGLGTAKGGSPKARVASYKVCWPTREGGCFDSDIIQAFDDAIHDGVDVLSLSLGGDPSAYSDDGLAIAAFHAVKKGIPVVCSAGNSGPEPGSVSNSAPWILTVGASTLDREFQAMVELKNGKRFKGSSLSKPLPEDKYYPLISGAQAKAANASAEDAMLCLPDTLDHAKAKGKIVACLRGETARVDKGEQVNLAGGVGMILCNDKLSGFETIADLHVLPASHINYEDGVAVFSYINSTKNPLAYLIPPTAIVHTKPAPTMAAFSSRGPNTITPQIIKPDVTAPGVNIIAAYSEAISPTEEPFDKRKVPFITMSGTSMSCPHVSGVVGLLRTLHPKWSPAAIKSAIMTSARIRDNTKKPMRDGGSVDLGKANPFSYGSGHIRPNGAMDPGLVYDLNTKDYLNFLCAIGYDEEKIRLFSDGPYKCPASASLLNFNYPSIAVENMPAKVTVTRRLKNVGQPGVYRARVRQPEGVKVTVKPRVLKFDHVGQEKTFKMTLSGAVEKNFVTDGTLIWTDGKHFVRSPIVVSSGSF 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14891858 14896623 - evm.model.ptg000005l.473 HCH3g1044 541772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1044 779 FunFam Subtilisin-like protease SBT5.3 21 116 - -
HCH3g1044 779 FunFam Subtilisin-like protease SBT1.5 146 379 - -
HCH3g1044 779 Gene3D - 653 777 - -
HCH3g1044 779 CDD Peptidases_S8_3 114 599 IPR034197 -
HCH3g1044 779 Pfam Fibronectin type-III domain 681 774 IPR041469 -
HCH3g1044 779 Pfam PA domain 404 480 IPR003137 -
HCH3g1044 779 Gene3D Peptidase S8/S53 domain 147 649 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH3g1044 779 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 116 IPR037045 -
HCH3g1044 779 ProSiteProfiles Serine proteases, subtilase domain profile. 120 636 - -
HCH3g1044 779 FunFam Subtilisin-like protease SBT1.5 653 777 - -
HCH3g1044 779 Gene3D - 359 502 - -
HCH3g1044 779 Pfam Peptidase inhibitor I9 31 116 IPR010259 -
HCH3g1044 779 ProSitePatterns Serine proteases, subtilase family, serine active site. 564 574 IPR023828 -
HCH3g1044 779 FunFam subtilisin-like protease SBT1.5 359 502 - -
HCH3g1044 779 CDD PA_subtilisin_like 366 495 - -
HCH3g1044 779 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 57 773 IPR045051 -
HCH3g1044 779 PRINTS Subtilisin serine protease family (S8) signature 226 239 IPR015500 -
HCH3g1044 779 PRINTS Subtilisin serine protease family (S8) signature 563 579 IPR015500 -
HCH3g1044 779 PRINTS Subtilisin serine protease family (S8) signature 144 163 IPR015500 -
HCH3g1044 779 Pfam Subtilase family 145 607 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH3g1044 779 SUPERFAMILY Subtilisin-like 115 640 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1044 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0105 HCH-Chr12:559257 HCH3g1044 HCH-Chr3:14891858 5.60E-150 dispersed
HCH3g1044 HCH-Chr3:14891858 HCH3g1060 HCH-Chr3:15651122 1.20E-277 dispersed
HCH3g1044 HCH-Chr3:14891858 HCH6g0900 HCH-Chr6:43769229 3.60E-229 wgd
HCH3g1044 HCH-Chr3:14891858 HCH9g0505 HCH-Chr9:3217585 2.10E-128 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g0429 . 17 767 Subtilisin-like Serine Gene Family AT1G01900 58.9 1.4e-238 822.8
HCH5g0130 . 11 771 Subtilisin-like Serine Gene Family AT1G04110 69.0 0.0e+00 1078.2
HCH12g0105 . 4 773 Subtilisin-like Serine Gene Family AT1G20150 53.5 5.5e-230 794.3
HCH12g0105 . 1 513 Subtilisin-like Serine Gene Family AT1G20160 59.3 7.3e-168 587.4
HCH14g1153 . 8 839 Subtilisin-like Serine Gene Family AT1G30600 66.2 0.0e+00 1085.9
HCH12g1415 . 62 773 Subtilisin-like Serine Gene Family AT1G32940 54.7 1.4e-224 776.2
HCH6g1198 . 34 237 Subtilisin-like Serine Gene Family AT1G32940 50.9 3.5e-61 233.4
HCH12g1415 . 62 773 Subtilisin-like Serine Gene Family AT1G32950 56.0 9.7e-229 790.0
HCH6g1198 . 34 237 Subtilisin-like Serine Gene Family AT1G32950 50.4 1.9e-59 227.6
HCH12g1415 . 34 773 Subtilisin-like Serine Gene Family AT1G32960 55.0 3.1e-233 805.1
HCH6g1198 . 34 237 Subtilisin-like Serine Gene Family AT1G32960 50.4 5.4e-60 229.6
HCH7g0364 . 35 773 Subtilisin-like Serine Gene Family AT2G04160 64.8 4.0e-289 990.7
HCH6g0901 . 29 769 Subtilisin-like Serine Gene Family AT2G04160 60.6 5.8e-264 907.1
HCH6g0906 . 30 767 Subtilisin-like Serine Gene Family AT2G04160 59.3 1.9e-259 892.1
HCH3g1044 . 31 774 Subtilisin-like Serine Gene Family AT2G04160 56.7 4.9e-247 850.9
HCH6g0900 . 30 771 Subtilisin-like Serine Gene Family AT2G04160 54.9 4.8e-234 807.7
HCH8g0597 . 23 760 Subtilisin-like Serine Gene Family AT2G05920 74.4 0.0e+00 1101.3
HCH14g0343 . 24 757 Subtilisin-like Serine Gene Family AT2G05920 56.1 3.1e-230 795.0
HCH4g0597 . 33 770 Subtilisin-like Serine Gene Family AT2G05920 54.5 8.9e-217 750.4
HCH11g1168 . 28 772 Subtilisin-like Serine Gene Family AT2G05920 53.1 9.8e-216 746.9
HCH4g1519 . 33 761 Subtilisin-like Serine Gene Family AT2G05920 52.2 4.0e-209 724.9
HCH2g0544 . 31 766 Subtilisin-like Serine Gene Family AT2G05920 51.1 3.5e-205 711.8
HCH4g1548 . 22 765 Subtilisin-like Serine Gene Family AT2G05920 50.7 6.0e-197 684.5
HCH10g0224 . 40 835 Subtilisin-like Serine Gene Family AT2G19170 82.7 0.0e+00 1349.0
HCH4g1519 . 25 763 Subtilisin-like Serine Gene Family AT3G14067 65.6 4.6e-285 977.2
HCH14g0343 . 5 757 Subtilisin-like Serine Gene Family AT3G14067 53.6 3.5e-224 775.0
HCH8g0597 . 4 758 Subtilisin-like Serine Gene Family AT3G14067 53.8 1.5e-222 769.6
HCH4g0597 . 3 770 Subtilisin-like Serine Gene Family AT3G14067 50.2 2.7e-208 722.2
HCH4g1548 . 27 773 Subtilisin-like Serine Gene Family AT3G14240 77.1 0.0e+00 1182.2
HCH2g0544 . 33 774 Subtilisin-like Serine Gene Family AT3G14240 57.4 6.3e-242 833.9
HCH14g0343 . 25 753 Subtilisin-like Serine Gene Family AT3G14240 52.8 2.0e-216 749.2
HCH8g0597 . 26 754 Subtilisin-like Serine Gene Family AT3G14240 52.2 7.2e-214 740.7
HCH11g1168 . 31 771 Subtilisin-like Serine Gene Family AT3G14240 50.1 6.3e-210 727.6
HCH4g1519 . 33 759 Subtilisin-like Serine Gene Family AT3G14240 51.7 1.6e-208 723.0
HCH4g0597 . 36 766 Subtilisin-like Serine Gene Family AT3G14240 50.2 8.8e-204 707.2
HCH11g0395 . 22 566 Subtilisin-like Serine Gene Family AT4G00230 50.9 2.7e-144 509.2
HCH12g1415 . 62 773 Subtilisin-like Serine Gene Family AT4G10510 54.6 3.1e-227 785.0
HCH12g1415 . 36 773 Subtilisin-like Serine Gene Family AT4G10520 56.7 3.4e-232 801.6
HCH12g1415 . 36 773 Subtilisin-like Serine Gene Family AT4G10530 55.2 1.8e-222 769.2
HCH12g1415 . 23 773 Subtilisin-like Serine Gene Family AT4G10540 53.3 6.1e-229 790.8
HCH12g1415 . 62 773 Subtilisin-like Serine Gene Family AT4G10550 54.5 1.0e-225 780.0
HCH14g1153 . 9 839 Subtilisin-like Serine Gene Family AT4G20430 68.5 0.0e+00 1138.6
HCH3g0579 . 5 285 Subtilisin-like Serine Gene Family AT4G21320 77.0 1.6e-129 459.1
HCH12g1415 . 32 770 Subtilisin-like Serine Gene Family AT4G21630 52.0 4.4e-208 721.5
HCH12g1415 . 32 770 Subtilisin-like Serine Gene Family AT4G21650 51.7 2.7e-213 738.8
HCH2g1496 . 22 750 Subtilisin-like Serine Gene Family AT4G26330 54.8 1.8e-230 795.8
HCH10g0224 . 40 835 Subtilisin-like Serine Gene Family AT4G30020 82.7 0.0e+00 1338.2
HCH2g0544 . 10 774 Subtilisin-like Serine Gene Family AT4G34980 72.3 0.0e+00 1127.1
HCH4g1548 . 20 773 Subtilisin-like Serine Gene Family AT4G34980 53.6 5.2e-225 777.7
HCH11g1168 . 9 776 Subtilisin-like Serine Gene Family AT4G34980 51.0 1.6e-210 729.6
HCH14g0343 . 8 753 Subtilisin-like Serine Gene Family AT4G34980 51.0 2.6e-208 722.2
HCH8g0597 . 8 754 Subtilisin-like Serine Gene Family AT4G34980 51.0 1.7e-207 719.5
HCH4g1519 . 21 759 Subtilisin-like Serine Gene Family AT4G34980 50.2 1.8e-204 709.5
HCH9g0505 . 4 561 Subtilisin-like Serine Gene Family AT5G03620 59.4 3.8e-183 638.3
HCH11g0395 . 9 564 Subtilisin-like Serine Gene Family AT5G03620 56.3 6.0e-181 630.9
HCH8g0749 . 294 1053 Subtilisin-like Serine Gene Family AT5G19660 80.6 0.0e+00 1285.0
HCH14g1153 . 33 613 Subtilisin-like Serine Gene Family AT5G44530 70.7 1.3e-245 845.9
HCH9g1349 . 79 778 Subtilisin-like Serine Gene Family AT5G45640 52.3 5.6e-195 677.9
HCH9g1348 . 79 780 Subtilisin-like Serine Gene Family AT5G45640 52.0 4.0e-193 671.8
HCH2g0636 . 60 734 Subtilisin-like Serine Gene Family AT5G45640 50.1 1.4e-182 636.7
HCH14g1025 . 6 779 Subtilisin-like Serine Gene Family AT5G45650 57.8 1.1e-257 886.3
HCH9g1349 . 13 778 Subtilisin-like Serine Gene Family AT5G45650 54.1 8.4e-234 807.0
HCH9g1348 . 13 780 Subtilisin-like Serine Gene Family AT5G45650 53.8 6.0e-232 800.8
HCH2g0636 . 10 734 Subtilisin-like Serine Gene Family AT5G45650 53.0 1.9e-222 769.2
HCH11g1168 . 3 776 Subtilisin-like Serine Gene Family AT5G51750 70.9 0.0e+00 1136.7
HCH14g0343 . 20 757 Subtilisin-like Serine Gene Family AT5G51750 52.9 1.4e-228 789.6
HCH4g0597 . 12 770 Subtilisin-like Serine Gene Family AT5G51750 51.5 2.5e-222 768.8
HCH8g0597 . 23 758 Subtilisin-like Serine Gene Family AT5G51750 52.1 2.8e-221 765.4
HCH12g1571 . 35 731 Subtilisin-like Serine Gene Family AT5G59190 50.1 6.7e-187 651.0
HCH3g1044 . 21 778 Subtilisin-like Serine Gene Family AT5G59810 62.0 8.1e-274 939.9
HCH6g0901 . 4 769 Subtilisin-like Serine Gene Family AT5G59810 60.8 9.0e-265 909.8
HCH7g0364 . 19 773 Subtilisin-like Serine Gene Family AT5G59810 58.7 8.4e-263 903.3
HCH6g0906 . 16 767 Subtilisin-like Serine Gene Family AT5G59810 58.9 4.5e-256 880.9
HCH6g0900 . 26 771 Subtilisin-like Serine Gene Family AT5G59810 54.7 2.8e-226 781.9
HCH3g1060 . 12 715 Subtilisin-like Serine Gene Family AT5G59810 52.0 3.5e-216 748.4
HCH3g1058 . 18 693 Subtilisin-like Serine Gene Family AT5G59810 50.8 2.5e-206 715.7
HCH14g0343 . 22 757 Subtilisin-like Serine Gene Family AT5G67360 72.3 0.0e+00 1079.7
HCH4g0597 . 16 771 Subtilisin-like Serine Gene Family AT5G67360 65.6 3.4e-293 1004.2
HCH8g0597 . 7 759 Subtilisin-like Serine Gene Family AT5G67360 56.4 5.9e-237 817.4
HCH11g1168 . 31 772 Subtilisin-like Serine Gene Family AT5G67360 56.4 1.2e-232 803.1
HCH4g1519 . 1 760 Subtilisin-like Serine Gene Family AT5G67360 53.8 1.5e-219 759.6
HCH2g0544 . 2 769 Subtilisin-like Serine Gene Family AT5G67360 51.2 8.9e-209 723.8
HCH4g1548 . 18 768 Subtilisin-like Serine Gene Family AT5G67360 51.4 1.1e-203 706.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000094 2 9 4 4 4 9 0 9 9 7 6 10 16 7 9 22 9 5 21 9 7 5 6 12 12 10 2 10 10 2 247