Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g1044 | ATGGGGGTCTCAAAGTTTTCTTCCATTCTTTTCTTCTCCTCCTTCGTTATCTTCTCTCAGTTCATAACACCTAGTTTTGCTGCTAAAAAGTCCTATGTTGTATTGTTGGGATCTCACTCCCATGGATTAGAAGTTTCAGAAGCAGATCTTCAACGTGTCACCGATTCCCATTATGAACTCCTTGGATCTTTCTTGGGCAGTACTGAGAAGGCGAAAGATGCTATATTTTACTCTTACAAGAACCATATAAATGGATTCGCTGCAGTCCTCGAGGAGGAAGAGGCTTTGGAGCTTGCAAGGCATCCGGAAGTTGCATCGGTTTTGCCAAACCAAGCAAGAAAATTACATACAACCCATTCATGGGATTTCATGGACATGGAAAGGAATGGTGTAGTTCCTCGTGCTTCTCTATGGAAGAGAGCCAGATTTGGAGAAGACTCCATTATTGCCAATCTCGACACTGGTGTGTGGCCTGAATCAAAGAGCTTCAGTGATAAGGGGATAACTAAACCAATCCCAGCAAAATGGAAAGGACGCTGCGTGAATAACACTGCTGATGGAGTTCCTTGCAATAGGAAGCTAATTGGAGCCAAATACTACAACAAGGGCTATATCGCCTACATCATTTCACAAAACTCTTCATCCGATCTCTCTTTCGTCATCAACTCTACCAGAGACTACGAAGGCCACGGCTCCCACACACTATCCACCGCCGGGGGCAACTTCGTTCGGGGAGCCAGCGTCTTCGGTTCTGGATTAGGAACTGCTAAAGGAGGATCTCCTAAAGCTAGAGTTGCCTCTTACAAGGTCTGCTGGCCTACACGTGAAGGCGGCTGCTTCGATTCCGATATCATTCAAGCTTTCGACGATGCGATTCATGATGGAGTTGATGTCCTTTCTCTCTCACTTGGTGGAGATCCCTCTGCTTACAGTGATGACGGTCTTGCCATTGCCGCTTTTCACGCTGTTAAGAAAGGCATCCCCGTCGTTTGCTCCGCCGGCAATTCAGGTCCAGAACCAGGATCTGTCTCCAATTCTGCCCCTTGGATATTAACTGTCGGAGCCAGCACTTTGGACCGTGAGTTCCAAGCTATGGTTGAACTAAAAAACGGCAAACGCTTTAAGGGTTCTAGCCTTTCAAAACCTTTGCCAGAAGATAAATACTATCCATTAATAAGCGGAGCGCAGGCGAAAGCGGCAAATGCATCGGCGGAGGACGCTATGCTTTGCTTGCCTGACACTTTGGATCATGCAAAGGCCAAGGGGAAGATAGTTGCATGTTTAAGAGGAGAAACCGCGAGAGTTGATAAAGGAGAACAAGTAAATCTTGCTGGAGGCGTTGGAATGATTCTATGCAATGACAAGCTTAGTGGTTTTGAAACCATTGCTGATCTTCATGTACTTCCTGCTTCCCATATTAATTATGAAGATGGCGTTGCTGTATTTTCCTACATCAATTCCACCAAGAATCCTCTGGCTTATTTGATACCACCGACGGCGATAGTACACACCAAGCCTGCTCCGACTATGGCTGCCTTCTCCTCTAGAGGACCCAACACTATCACTCCTCAGATTATCAAGCCGGATGTCACCGCACCTGGTGTAAACATTATAGCTGCATATTCCGAAGCAATAAGCCCGACAGAAGAACCCTTTGACAAAAGAAAGGTTCCTTTCATCACCATGTCAGGCACCTCCATGTCCTGCCCTCATGTCTCTGGAGTTGTCGGACTTCTCAGAACTCTCCATCCTAAGTGGAGCCCCGCGGCCATTAAATCCGCCATCATGACATCCGCTAGAATAAGAGACAACACAAAGAAACCAATGCGGGACGGCGGCTCAGTCGATCTCGGTAAAGCAAACCCCTTCAGTTACGGTTCCGGCCACATACGACCAAACGGAGCGATGGATCCAGGGTTGGTTTATGACCTAAACACCAAAGATTACTTGAACTTTCTATGCGCCATTGGATACGATGAGGAAAAGATAAGACTGTTCTCAGATGGTCCATACAAATGTCCAGCTTCAGCAAGTCTTTTGAACTTCAATTACCCTTCAATAGCAGTGGAAAACATGCCTGCTAAAGTAACGGTCACAAGAAGACTGAAGAACGTGGGGCAGCCAGGCGTGTATAGAGCAAGAGTTCGTCAACCGGAGGGAGTTAAAGTGACGGTGAAGCCAAGAGTGTTGAAATTCGACCATGTTGGGCAAGAGAAGACCTTTAAGATGACGCTGTCGGGAGCTGTGGAGAAGAACTTTGTAACTGATGGCACGCTCATTTGGACTGATGGCAAGCACTTTGTTAGGAGTCCGATTGTTGTTTCGTCTGGCTCATTTTGA | 2340 | 46.75 | MGVSKFSSILFFSSFVIFSQFITPSFAAKKSYVVLLGSHSHGLEVSEADLQRVTDSHYELLGSFLGSTEKAKDAIFYSYKNHINGFAAVLEEEEALELARHPEVASVLPNQARKLHTTHSWDFMDMERNGVVPRASLWKRARFGEDSIIANLDTGVWPESKSFSDKGITKPIPAKWKGRCVNNTADGVPCNRKLIGAKYYNKGYIAYIISQNSSSDLSFVINSTRDYEGHGSHTLSTAGGNFVRGASVFGSGLGTAKGGSPKARVASYKVCWPTREGGCFDSDIIQAFDDAIHDGVDVLSLSLGGDPSAYSDDGLAIAAFHAVKKGIPVVCSAGNSGPEPGSVSNSAPWILTVGASTLDREFQAMVELKNGKRFKGSSLSKPLPEDKYYPLISGAQAKAANASAEDAMLCLPDTLDHAKAKGKIVACLRGETARVDKGEQVNLAGGVGMILCNDKLSGFETIADLHVLPASHINYEDGVAVFSYINSTKNPLAYLIPPTAIVHTKPAPTMAAFSSRGPNTITPQIIKPDVTAPGVNIIAAYSEAISPTEEPFDKRKVPFITMSGTSMSCPHVSGVVGLLRTLHPKWSPAAIKSAIMTSARIRDNTKKPMRDGGSVDLGKANPFSYGSGHIRPNGAMDPGLVYDLNTKDYLNFLCAIGYDEEKIRLFSDGPYKCPASASLLNFNYPSIAVENMPAKVTVTRRLKNVGQPGVYRARVRQPEGVKVTVKPRVLKFDHVGQEKTFKMTLSGAVEKNFVTDGTLIWTDGKHFVRSPIVVSSGSF | 779 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 14891858 | 14896623 | - | evm.model.ptg000005l.473 | HCH3g1044 | 541772 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g1044 | 779 | FunFam | Subtilisin-like protease SBT5.3 | 21 | 116 | - | - | |
HCH3g1044 | 779 | FunFam | Subtilisin-like protease SBT1.5 | 146 | 379 | - | - | |
HCH3g1044 | 779 | Gene3D | - | 653 | 777 | - | - | |
HCH3g1044 | 779 | CDD | Peptidases_S8_3 | 114 | 599 | IPR034197 | - | |
HCH3g1044 | 779 | Pfam | Fibronectin type-III domain | 681 | 774 | IPR041469 | - | |
HCH3g1044 | 779 | Pfam | PA domain | 404 | 480 | IPR003137 | - | |
HCH3g1044 | 779 | Gene3D | Peptidase S8/S53 domain | 147 | 649 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
HCH3g1044 | 779 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 20 | 116 | IPR037045 | - | |
HCH3g1044 | 779 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 120 | 636 | - | - | |
HCH3g1044 | 779 | FunFam | Subtilisin-like protease SBT1.5 | 653 | 777 | - | - | |
HCH3g1044 | 779 | Gene3D | - | 359 | 502 | - | - | |
HCH3g1044 | 779 | Pfam | Peptidase inhibitor I9 | 31 | 116 | IPR010259 | - | |
HCH3g1044 | 779 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 564 | 574 | IPR023828 | - | |
HCH3g1044 | 779 | FunFam | subtilisin-like protease SBT1.5 | 359 | 502 | - | - | |
HCH3g1044 | 779 | CDD | PA_subtilisin_like | 366 | 495 | - | - | |
HCH3g1044 | 779 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 57 | 773 | IPR045051 | - | |
HCH3g1044 | 779 | PRINTS | Subtilisin serine protease family (S8) signature | 226 | 239 | IPR015500 | - | |
HCH3g1044 | 779 | PRINTS | Subtilisin serine protease family (S8) signature | 563 | 579 | IPR015500 | - | |
HCH3g1044 | 779 | PRINTS | Subtilisin serine protease family (S8) signature | 144 | 163 | IPR015500 | - | |
HCH3g1044 | 779 | Pfam | Subtilase family | 145 | 607 | IPR000209 | GO:0006508(InterPro)|GO:0008236(InterPro) | |
HCH3g1044 | 779 | SUPERFAMILY | Subtilisin-like | 115 | 640 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0105 | HCH-Chr12:559257 | HCH3g1044 | HCH-Chr3:14891858 | 5.60E-150 | dispersed | |
HCH3g1044 | HCH-Chr3:14891858 | HCH3g1060 | HCH-Chr3:15651122 | 1.20E-277 | dispersed | |
HCH3g1044 | HCH-Chr3:14891858 | HCH6g0900 | HCH-Chr6:43769229 | 3.60E-229 | wgd | |
HCH3g1044 | HCH-Chr3:14891858 | HCH9g0505 | HCH-Chr9:3217585 | 2.10E-128 | wgd |
Pathway information
