Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1044 ATGGGGGTCTCAAAGTTTTCTTCCATTCTTTTCTTCTCCTCCTTCGTTATCTTCTCTCAGTTCATAACACCTAGTTTTGCTGCTAAAAAGTCCTATGTTGTATTGTTGGGATCTCACTCCCATGGATTAGAAGTTTCAGAAGCAGATCTTCAACGTGTCACCGATTCCCATTATGAACTCCTTGGATCTTTCTTGGGCAGTACTGAGAAGGCGAAAGATGCTATATTTTACTCTTACAAGAACCATATAAATGGATTCGCTGCAGTCCTCGAGGAGGAAGAGGCTTTGGAGCTTGCAAGGCATCCGGAAGTTGCATCGGTTTTGCCAAACCAAGCAAGAAAATTACATACAACCCATTCATGGGATTTCATGGACATGGAAAGGAATGGTGTAGTTCCTCGTGCTTCTCTATGGAAGAGAGCCAGATTTGGAGAAGACTCCATTATTGCCAATCTCGACACTGGTGTGTGGCCTGAATCAAAGAGCTTCAGTGATAAGGGGATAACTAAACCAATCCCAGCAAAATGGAAAGGACGCTGCGTGAATAACACTGCTGATGGAGTTCCTTGCAATAGGAAGCTAATTGGAGCCAAATACTACAACAAGGGCTATATCGCCTACATCATTTCACAAAACTCTTCATCCGATCTCTCTTTCGTCATCAACTCTACCAGAGACTACGAAGGCCACGGCTCCCACACACTATCCACCGCCGGGGGCAACTTCGTTCGGGGAGCCAGCGTCTTCGGTTCTGGATTAGGAACTGCTAAAGGAGGATCTCCTAAAGCTAGAGTTGCCTCTTACAAGGTCTGCTGGCCTACACGTGAAGGCGGCTGCTTCGATTCCGATATCATTCAAGCTTTCGACGATGCGATTCATGATGGAGTTGATGTCCTTTCTCTCTCACTTGGTGGAGATCCCTCTGCTTACAGTGATGACGGTCTTGCCATTGCCGCTTTTCACGCTGTTAAGAAAGGCATCCCCGTCGTTTGCTCCGCCGGCAATTCAGGTCCAGAACCAGGATCTGTCTCCAATTCTGCCCCTTGGATATTAACTGTCGGAGCCAGCACTTTGGACCGTGAGTTCCAAGCTATGGTTGAACTAAAAAACGGCAAACGCTTTAAGGGTTCTAGCCTTTCAAAACCTTTGCCAGAAGATAAATACTATCCATTAATAAGCGGAGCGCAGGCGAAAGCGGCAAATGCATCGGCGGAGGACGCTATGCTTTGCTTGCCTGACACTTTGGATCATGCAAAGGCCAAGGGGAAGATAGTTGCATGTTTAAGAGGAGAAACCGCGAGAGTTGATAAAGGAGAACAAGTAAATCTTGCTGGAGGCGTTGGAATGATTCTATGCAATGACAAGCTTAGTGGTTTTGAAACCATTGCTGATCTTCATGTACTTCCTGCTTCCCATATTAATTATGAAGATGGCGTTGCTGTATTTTCCTACATCAATTCCACCAAGAATCCTCTGGCTTATTTGATACCACCGACGGCGATAGTACACACCAAGCCTGCTCCGACTATGGCTGCCTTCTCCTCTAGAGGACCCAACACTATCACTCCTCAGATTATCAAGCCGGATGTCACCGCACCTGGTGTAAACATTATAGCTGCATATTCCGAAGCAATAAGCCCGACAGAAGAACCCTTTGACAAAAGAAAGGTTCCTTTCATCACCATGTCAGGCACCTCCATGTCCTGCCCTCATGTCTCTGGAGTTGTCGGACTTCTCAGAACTCTCCATCCTAAGTGGAGCCCCGCGGCCATTAAATCCGCCATCATGACATCCGCTAGAATAAGAGACAACACAAAGAAACCAATGCGGGACGGCGGCTCAGTCGATCTCGGTAAAGCAAACCCCTTCAGTTACGGTTCCGGCCACATACGACCAAACGGAGCGATGGATCCAGGGTTGGTTTATGACCTAAACACCAAAGATTACTTGAACTTTCTATGCGCCATTGGATACGATGAGGAAAAGATAAGACTGTTCTCAGATGGTCCATACAAATGTCCAGCTTCAGCAAGTCTTTTGAACTTCAATTACCCTTCAATAGCAGTGGAAAACATGCCTGCTAAAGTAACGGTCACAAGAAGACTGAAGAACGTGGGGCAGCCAGGCGTGTATAGAGCAAGAGTTCGTCAACCGGAGGGAGTTAAAGTGACGGTGAAGCCAAGAGTGTTGAAATTCGACCATGTTGGGCAAGAGAAGACCTTTAAGATGACGCTGTCGGGAGCTGTGGAGAAGAACTTTGTAACTGATGGCACGCTCATTTGGACTGATGGCAAGCACTTTGTTAGGAGTCCGATTGTTGTTTCGTCTGGCTCATTTTGA 2340 46.75 MGVSKFSSILFFSSFVIFSQFITPSFAAKKSYVVLLGSHSHGLEVSEADLQRVTDSHYELLGSFLGSTEKAKDAIFYSYKNHINGFAAVLEEEEALELARHPEVASVLPNQARKLHTTHSWDFMDMERNGVVPRASLWKRARFGEDSIIANLDTGVWPESKSFSDKGITKPIPAKWKGRCVNNTADGVPCNRKLIGAKYYNKGYIAYIISQNSSSDLSFVINSTRDYEGHGSHTLSTAGGNFVRGASVFGSGLGTAKGGSPKARVASYKVCWPTREGGCFDSDIIQAFDDAIHDGVDVLSLSLGGDPSAYSDDGLAIAAFHAVKKGIPVVCSAGNSGPEPGSVSNSAPWILTVGASTLDREFQAMVELKNGKRFKGSSLSKPLPEDKYYPLISGAQAKAANASAEDAMLCLPDTLDHAKAKGKIVACLRGETARVDKGEQVNLAGGVGMILCNDKLSGFETIADLHVLPASHINYEDGVAVFSYINSTKNPLAYLIPPTAIVHTKPAPTMAAFSSRGPNTITPQIIKPDVTAPGVNIIAAYSEAISPTEEPFDKRKVPFITMSGTSMSCPHVSGVVGLLRTLHPKWSPAAIKSAIMTSARIRDNTKKPMRDGGSVDLGKANPFSYGSGHIRPNGAMDPGLVYDLNTKDYLNFLCAIGYDEEKIRLFSDGPYKCPASASLLNFNYPSIAVENMPAKVTVTRRLKNVGQPGVYRARVRQPEGVKVTVKPRVLKFDHVGQEKTFKMTLSGAVEKNFVTDGTLIWTDGKHFVRSPIVVSSGSF 779
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 14891858 14896623 - evm.model.ptg000005l.473 HCH3g1044 541772
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1044 779 FunFam Subtilisin-like protease SBT5.3 21 116 - -
HCH3g1044 779 FunFam Subtilisin-like protease SBT1.5 146 379 - -
HCH3g1044 779 Gene3D - 653 777 - -
HCH3g1044 779 CDD Peptidases_S8_3 114 599 IPR034197 -
HCH3g1044 779 Pfam Fibronectin type-III domain 681 774 IPR041469 -
HCH3g1044 779 Pfam PA domain 404 480 IPR003137 -
HCH3g1044 779 Gene3D Peptidase S8/S53 domain 147 649 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH3g1044 779 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 20 116 IPR037045 -
HCH3g1044 779 ProSiteProfiles Serine proteases, subtilase domain profile. 120 636 - -
HCH3g1044 779 FunFam Subtilisin-like protease SBT1.5 653 777 - -
HCH3g1044 779 Gene3D - 359 502 - -
HCH3g1044 779 Pfam Peptidase inhibitor I9 31 116 IPR010259 -
HCH3g1044 779 ProSitePatterns Serine proteases, subtilase family, serine active site. 564 574 IPR023828 -
HCH3g1044 779 FunFam subtilisin-like protease SBT1.5 359 502 - -
HCH3g1044 779 CDD PA_subtilisin_like 366 495 - -
HCH3g1044 779 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 57 773 IPR045051 -
HCH3g1044 779 PRINTS Subtilisin serine protease family (S8) signature 226 239 IPR015500 -
HCH3g1044 779 PRINTS Subtilisin serine protease family (S8) signature 563 579 IPR015500 -
HCH3g1044 779 PRINTS Subtilisin serine protease family (S8) signature 144 163 IPR015500 -
HCH3g1044 779 Pfam Subtilase family 145 607 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH3g1044 779 SUPERFAMILY Subtilisin-like 115 640 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0105 HCH-Chr12:559257 HCH3g1044 HCH-Chr3:14891858 5.60E-150 dispersed
HCH3g1044 HCH-Chr3:14891858 HCH3g1060 HCH-Chr3:15651122 1.20E-277 dispersed
HCH3g1044 HCH-Chr3:14891858 HCH6g0900 HCH-Chr6:43769229 3.60E-229 wgd
HCH3g1044 HCH-Chr3:14891858 HCH9g0505 HCH-Chr9:3217585 2.10E-128 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1044 - - - 0.0