Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1058 ATGGGGTTATCAAAGTTTTTTTCCATTATTTTCTTGTCATTTTTCATCTTCTCTCTCTTCATAACATCAACGATTGCTGCTAAAAAGTCGTATGTGGTGTTGTTGGGATCCCATTCGCATGGATTGGAAGTTTCAGAAGAAAATCTTCAACGTGTCACCGAATCCCATTACAAACTCCTTGGATCTTTATTGGGCAGTACTGAGAAGGCAAAAGATGCTATATTTTACTCTTACAAGAAGCATATAAATGGATTTGCTGCAATCCTCGAGGAGGAAGAGGCTACGGAGCTTGCAAAGCACCCAGAAGTTGCATCAGTTTTGACAAATCAAGTAAGGGAATTACATACAACCCATTCATGGGATTTCATGAATTTGGAAAATAAAGGTGGTCAAGTTCCCTCCTCTTCTCTTTGGGAGAAGGCCAGATATGGAGAAGACTCCATTATTGCTACCCTCGACAGTGGTGTGTGGCCCGAGTCATTGAGCTTTAGAGATGAAGGCATAAATGGACCAATACCATCAAGATGGAAAGGAGGCTGCGTGGACAGCGATTCAGATGGAGTAAAATGCAACAGGAAGCTTATTGGAGCGAAACCCTTCAATCAGGGTTATATCTCAGTCATGCGTTCAGAAAACCCTTACTTTGATTCGTCCTCCGTAAGAGACATTACAAGAGACTATGCAGGTCATGGCTCCCATACACTATCAACGGTCGGCGGCAACTTCGTTTCTGGAAAAGACGTGTTTGGTTCTTCTGGATTTGGAGCAGCCAAAGGAGGTTCCCCTAAAGCTAGAATTGCTGCATACAAGGTTTGTTGGCCCGGATGCTACGATGCCGATATTGTTCAAGCTTTTGATGAAGCCATTCACGATGGAGTCGACGTTCTTTCTATCTCACTTGGTGGTGGTGTTAGTCAATACTATGAAGATGGGATGGCCATCGCCGCCTTTCATGCTATTAAAAATAATATTTCAGTCGTCTGTTCCGCCGGGAACGGTGGCCCTGGCCCTGCAACTGCCATCAATGTTGCCCCTTGGATATTCACTATTGGAGCTAGCACTTTGGATCGGAAATTCCGAGCCATTGTTCGACTCGGAAATGGCCAAACCTATACGGGCTCCAGCCTTTCAAAAAGTTTGCCGGAAGATAAATCATATCCATTGATAAGTGGAGCACAGGCGGTGAAGGGAAAGATAGTTGCTTGTTTAAGAGGAGAAAGTCCAAGAATTGACATTGGAAAAGAAGCAGCCCGTGCTGGTGCTGCTGGAATGATTCTCTGCAACGACCAAAACAGTGGTGAACAAATCAATAACGATATCCATGTCCTTCCTACTTCCCACATTAACTATCGAGATGGTTACTATGTATTATACTACATCGATAACACCGAGAATCCCACTGCGTATCTCGAACCCCCGACTGAAGATGTCGGCATCAAGCCGGCTCCAACCATGGCAAGATTCTCCTCTAGAGGACCCAACATGGTCACACCTGAGATTATCAAGCCGGATGTAACTGCACCTGGTGTAGACATTATAGCTGCTTATACTCAAGCTGAAACTAAAGTAAATGACAACACGGAGCACGCGATCAACGATGGCGGCACAGTTCCGGTGGGCGCATTCAGCTATGGTTCAGGCCATGTCCAACCAAACGAGGCAGCAGATCCTGGATTGGTTTATGACTTAACTCCCAATGATTACTTGGACTTTCTATGTGCCATTGGATATAGTCAGAACATGCTCAGAGCCTTCACAGATGAGTACTATAGATGCCCAGCTTCAGCAAGTCTTTTGAATTTCAATTACCCTTCAATTGCAGTCCAAAACTTCTATGGAAGTGTTACAGTAACAAGGAAATTAAAGAATGTGGGATCTCCAGGAGTATATAGAGCCACAGTCAAGGAACCAGCTGGAATTTCAGTTTCAGTGGAACCAAGTGAGTTGAAATTTGATCATATTGGTGAAGAGAAGAGCTTCCAGTTGACAATGAACGGATATCTTTATAACTACGTTGCTGACGGGACTCTTATTTGGTCTGATGGCAACCACTCTGTCAGGAGTCCTATCGTAGTTTCTGGTGGTTATTTCTAG 2094 44.22 MGLSKFFSIIFLSFFIFSLFITSTIAAKKSYVVLLGSHSHGLEVSEENLQRVTESHYKLLGSLLGSTEKAKDAIFYSYKKHINGFAAILEEEEATELAKHPEVASVLTNQVRELHTTHSWDFMNLENKGGQVPSSSLWEKARYGEDSIIATLDSGVWPESLSFRDEGINGPIPSRWKGGCVDSDSDGVKCNRKLIGAKPFNQGYISVMRSENPYFDSSSVRDITRDYAGHGSHTLSTVGGNFVSGKDVFGSSGFGAAKGGSPKARIAAYKVCWPGCYDADIVQAFDEAIHDGVDVLSISLGGGVSQYYEDGMAIAAFHAIKNNISVVCSAGNGGPGPATAINVAPWIFTIGASTLDRKFRAIVRLGNGQTYTGSSLSKSLPEDKSYPLISGAQAVKGKIVACLRGESPRIDIGKEAARAGAAGMILCNDQNSGEQINNDIHVLPTSHINYRDGYYVLYYIDNTENPTAYLEPPTEDVGIKPAPTMARFSSRGPNMVTPEIIKPDVTAPGVDIIAAYTQAETKVNDNTEHAINDGGTVPVGAFSYGSGHVQPNEAADPGLVYDLTPNDYLDFLCAIGYSQNMLRAFTDEYYRCPASASLLNFNYPSIAVQNFYGSVTVTRKLKNVGSPGVYRATVKEPAGISVSVEPSELKFDHIGEEKSFQLTMNGYLYNYVADGTLIWSDGNHSVRSPIVVSGGYF 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15529062 15532945 + evm.model.ptg000005l.459 HCH3g1058 541786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1058 697 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 115 IPR037045 -
HCH3g1058 697 ProSiteProfiles Serine proteases, subtilase domain profile. 119 555 - -
HCH3g1058 697 Pfam Subtilase family 145 520 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH3g1058 697 SUPERFAMILY Subtilisin-like 114 559 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH3g1058 697 Pfam PA domain 392 453 IPR003137 -
HCH3g1058 697 Pfam Peptidase inhibitor I9 30 115 IPR010259 -
HCH3g1058 697 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 56 524 IPR045051 -
HCH3g1058 697 Gene3D Peptidase S8/S53 domain 478 530 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH3g1058 697 Gene3D Peptidase S8/S53 domain 147 355 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH3g1058 697 SUPERFAMILY PA domain 393 458 IPR046450 -
HCH3g1058 697 Pfam Fibronectin type-III domain 600 692 IPR041469 -
HCH3g1058 697 Gene3D - 572 694 - -
HCH3g1058 697 CDD PA_subtilisin_like 363 470 - -
HCH3g1058 697 Gene3D - 356 393 - -
HCH3g1058 697 Gene3D - 394 477 - -
HCH3g1058 697 CDD Peptidases_S8_3 113 355 IPR034197 -
HCH3g1058 697 FunFam Subtilisin-like protease SBT5.3 20 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1058 HCH-Chr3:15529062 HCH6g0901 HCH-Chr6:43776676 3.30E-202 dispersed
HCH3g1058 HCH-Chr3:15529062 HCH3g1060 HCH-Chr3:15651122 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1058 - - - 0.0