Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1060 ATGGGGTTATCAAAGTATTGTTCCATTGTTTTCTCATTGTTTTTCATCTTCTCTCTCTTCATAACTTCTACAATCGCTGCTAAAAAGTCGTATGTGGTGTTGTTGGGAACCCATTCACATGGATTGGAAGTTTCAGAAGCAAAACTTCAACGTGTCACCGAATCTCATTACAAACTCCTTGGATCTTTCTTGGGCAGTGATGAGAAGGCGAAAGATGCTATATTTTACTCGTACAAGAAGCATATAAATGGATTTGCTGCAATTCTCGAGGAGGAAGAGGCCACGGAGCTTGCAAAGCACCCAGAAGTTGTCTCAGTTTTGCCAAATGGAGTAAGGGAATTATATACAACCCATTCATGGAATTTCATGAATTTGGAAAATAAAGGTGGTCAAGTTCCCTCTTCTTCCCTTTGGGAGAAGGCCAGATATGGAGAAGACGCCATTATTGCTACCCTCGACGGTGGTGTGTGGCCTGAGTCGATGAGCTTTAGAGATGAAGGCATAAATGGACCAATTCCATCAAGATGGAGAGGAAGCTGCGAGAATAGCAATATTGATGGAGTAAAATGCAACAGGAAGCTGATCGGGGCGAAATTCTTCAATGAGGGTTTTATCTCATCAGTGCGTTCAGGAAACACTTACTTTGATCTGTCCACCATAAAGAACACTACACGCGACTATCAAGGCCATGGCAGCCACACACTATCAACGCTCGGCGGAAACTTCGTCTCTGGAAAAAACGTGTTTGGTTCTTCTGGATTCGGTGCAGCAAAAGGAGGTTCCCCTAAAGCTAGAATCGCTGCTTACAAGGTTTGCTGGCCTATACAAGAATCGGGTGGTTGCTATGATGCCGATATTATTCAAGGTTTCGAAGAAGCCATTCACGATGGAGTCGACGTTCTTTCTCTCTCACTTGGAAGTGGTCCTGCTCCTTACTATACAGATGGTCTCGCCATTTCCGCCTTTCATGCTGTTAAAAATAATATCAGCGTCGTTTGCGCCGGCGGGAATTCCGGTCCTTGGCCTGGAACCATCGACAATATTGCCCCTTGGATATTAACTGTTGGAGCAAGTACTTTGGACCGTAGATTCGAAGCTGTTGTTCGACTTGGAAACGGCCAAACCTTTATGGGCTCCAGCCTTTCTAAAAGTTTGCCGGAAGATAAATCGTATCCATTGATAAGCGGAGCACAGGCGGGTGTTATGAATGCATATTCAGGAGATGCAATGCTGAAGGGAAAGATAGTAGCTTGTTTAAGAGGAGGAAGTTCTAAAATTGACAAAGGAAAAGAAGCAGCCCGTGCTGGTGCAGTTGGAATGATTCTTTGCAACGACCAATACAGTGGTGATGAACTCAGTAACGAAATCCATGTCCTTCCTACTTCTCAAATTGGTTATGAAGATGGTTACTATGTATTATCCTACATCGATTACAGCCAGAATCCCACAGCTTATCTTGAACCCCCGACCGAAGAATTCGGTCTCAAGCCAGCGCCAACCATGGCCGCCTTCTCTTCTAGAGGACCCAGCATAATCACACCTGAGATTATCAAGCCTGATGTAACTGCACCTGGTGTAGACATTATAGCTGCGTATACTGAAGCAATAAAACCTAATGCTAAAGTAAATGACAACACAAGGCACGCGATGAATGACGGTGGCACAGTTCCGGCTGGCGCATTCAGCTACGGTTCAGGCCATGTACAACCAAATGACGCAGCAGATCCTGGATTGGTTTATGACTTAACTCCCAATGATTACTTGGACTTTCTATGTGCCATTGGATATAGTGAGAACATGCTCAGAGCCTTCACAGATGAGTATCATAGATGTCCAGCTTCAGCAAGTCTTTTGAATTTCAATTACCCTTCAATAGCAGTCCAAAATTTCTATGGAAGTGTCACAGTAACAAGGAAGTTGAAGAACGTGGGATCGCCAGGAGTATATAAAGCCACAGTCGAGGAACCAGTTGGAATTTCAGTTTCAGTGGAACCAAGTGAGTTGAAATTTGATCACATTGGTGAAGAGAAGAGCTTCCAGTTGACAATGAACGGATATCTTTATAACTACGTTACTGATGGGGCTCTTATTTGGTCTGATGGCAAGCACTCTGTTAGGAGTCCTATCGTAGTTTCTGCTGGTTCTTTCTAG 2151 44.07 MGLSKYCSIVFSLFFIFSLFITSTIAAKKSYVVLLGTHSHGLEVSEAKLQRVTESHYKLLGSFLGSDEKAKDAIFYSYKKHINGFAAILEEEEATELAKHPEVVSVLPNGVRELYTTHSWNFMNLENKGGQVPSSSLWEKARYGEDAIIATLDGGVWPESMSFRDEGINGPIPSRWRGSCENSNIDGVKCNRKLIGAKFFNEGFISSVRSGNTYFDLSTIKNTTRDYQGHGSHTLSTLGGNFVSGKNVFGSSGFGAAKGGSPKARIAAYKVCWPIQESGGCYDADIIQGFEEAIHDGVDVLSLSLGSGPAPYYTDGLAISAFHAVKNNISVVCAGGNSGPWPGTIDNIAPWILTVGASTLDRRFEAVVRLGNGQTFMGSSLSKSLPEDKSYPLISGAQAGVMNAYSGDAMLKGKIVACLRGGSSKIDKGKEAARAGAVGMILCNDQYSGDELSNEIHVLPTSQIGYEDGYYVLSYIDYSQNPTAYLEPPTEEFGLKPAPTMAAFSSRGPSIITPEIIKPDVTAPGVDIIAAYTEAIKPNAKVNDNTRHAMNDGGTVPAGAFSYGSGHVQPNDAADPGLVYDLTPNDYLDFLCAIGYSENMLRAFTDEYHRCPASASLLNFNYPSIAVQNFYGSVTVTRKLKNVGSPGVYKATVEEPVGISVSVEPSELKFDHIGEEKSFQLTMNGYLYNYVTDGALIWSDGKHSVRSPIVVSAGSF 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15651122 15654887 - evm.model.ptg000005l.457 HCH3g1060 541788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1060 716 Gene3D - 591 714 - -
HCH3g1060 716 Pfam Fibronectin type-III domain 619 711 IPR041469 -
HCH3g1060 716 Gene3D - 361 493 - -
HCH3g1060 716 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 115 IPR037045 -
HCH3g1060 716 Pfam Peptidase inhibitor I9 30 114 IPR010259 -
HCH3g1060 716 CDD PA_subtilisin_like 367 486 - -
HCH3g1060 716 FunFam subtilisin-like protease SBT1.5 361 493 - -
HCH3g1060 716 SUPERFAMILY Subtilisin-like 114 578 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH3g1060 716 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 56 540 IPR045051 -
HCH3g1060 716 CDD Peptidases_S8_3 113 360 IPR034197 -
HCH3g1060 716 FunFam Subtilisin-like protease SBT5.3 20 115 - -
HCH3g1060 716 SUPERFAMILY PA domain 409 477 IPR046450 -
HCH3g1060 716 ProSiteProfiles Serine proteases, subtilase domain profile. 119 574 - -
HCH3g1060 716 Pfam Subtilase family 145 539 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
HCH3g1060 716 Gene3D Peptidase S8/S53 domain 146 553 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
HCH3g1060 716 Pfam PA domain 391 469 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1044 HCH-Chr3:14891858 HCH3g1060 HCH-Chr3:15651122 1.20E-277 dispersed
HCH3g1060 HCH-Chr3:15651122 HCH6g0901 HCH-Chr6:43776676 1.50E-205 dispersed
HCH3g1058 HCH-Chr3:15529062 HCH3g1060 HCH-Chr3:15651122 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1060 - - - 0.0