Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1129 ATGGCAAGCCAAGGAGTAGGAGAGTCTGGATTATCAAATTCTGTTCCTTCTTCTTCTTCCAATCACGACTTTCTTCCTTATTCCACTTTCCATGGGATTCATAATCCTTCCATCGGTTTCATAAATCAAGAAGGATCTCATGCTTTCGATTTTGGAGAGCTGGAAGAAGCAATTGTGTTACAAGGTGTTAAGCTTGGAAATGATGAAGCTAAATCGCCACATTTTCTCACAGGGAGGCCTGCAGCTACAGCTACTTTGGAAATGTTCCCTTCATGGCCAATAAGATTTCATCAAACCCCAATATTGGGAGGAAGTTCAAAATCAGGAGGAGAAAGCACTGATTCAGGATCAGCTAATTTAAACACTCTTACAAGCAAAGCTGAATTAGAACCTGAATCTCCCATAAGTAGAAGGACATCATTTTCAAATCAAGGATTTTTTGATCATCACATTCAAAATCTCCAAGCAGATATGGAAAATGATGTCTTGAAAACTGAATCATCACAGAATCAATCTCCTGCTAAGCAACTACAACAAAAGAGAAAAGGAGCATCTGGTTCAACATCTGAGAGGCAACTCGATGCCAAGACCCTGAGACGTTTAGCACAAAACAGAGAAGCTGCAAGAAAGAGCCGCCTGAGAAAAAAGGCTTATATACAGCAGCTAGAATCTAGTAGAATCAAGCTGTCGCAACTTGAACAAGACCTCCATCGAGCCCGGTCTCAGGGGATGTTTTTGGGTGCTTGTGGTGGCGTTGCGGGTGGCAGTATCAGCTCTGGAGCCGCGTTATTTGATATGGAGTACGCAAGGTGGCTAGACGACGATCACCGTCTCATGGCAGAGCTCCGGACGGCCTTGCAAGCGCAGCTGCCGGACAGCGATCTTAGAGCAATAGTAGATAGTTACATTTGTCACTACGATGAAATTTTCCATCTAAAAGGCGTGGCTGCTAAATCAGATGTGTTTCATCTCATTACCGGAATGTGGATGACACCGGCCGAGCGCTGCTTCCTCTGGATCGGCGGTTTCCGGCCCTCCAAACTCATAGAGATGCTTATACCCCAATTAGACACGCTAACAGAACAGCAAGCAATGGGAATATGTAAGCTTCAACAATCTTCACATGAGACAGAAGATGCTCTGTATCAGGGCTTGGAACAGCTTCAACATTCTCTCATAATCACCATTGCTGGCACTTCTGTCATCGACGGCATGAACCATATGGCTGTCGCCGCTGGAAAGCTTTCCAATCTTGAAGGTTTCATCCGCCAGGCTGATATGTTGAGACAGCAGACTCTTCATCAGTTACGTCGAATACTGACAGTCCGACAAGCAGCCAGATGTTTTCTCGTGATTGGTGAATACTATGGAAGGTTACGAGCTCTTAGTTCCTTGTGGGTGTCCCGACCAAGAGAAAGTTGTATGAATGATGAAAATTCATGCCAGACAACAACTGAGCTGCAGATGATTCAAGCTTCCAACAATCATTTCTCAAACTTCTGA 1503 44.51 MASQGVGESGLSNSVPSSSSNHDFLPYSTFHGIHNPSIGFINQEGSHAFDFGELEEAIVLQGVKLGNDEAKSPHFLTGRPAATATLEMFPSWPIRFHQTPILGGSSKSGGESTDSGSANLNTLTSKAELEPESPISRRTSFSNQGFFDHHIQNLQADMENDVLKTESSQNQSPAKQLQQKRKGASGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGMFLGACGGVAGGSISSGAALFDMEYARWLDDDHRLMAELRTALQAQLPDSDLRAIVDSYICHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLDTLTEQQAMGICKLQQSSHETEDALYQGLEQLQHSLIITIAGTSVIDGMNHMAVAAGKLSNLEGFIRQADMLRQQTLHQLRRILTVRQAARCFLVIGEYYGRLRALSSLWVSRPRESCMNDENSCQTTTELQMIQASNNHFSNF 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 34951690 34958967 + evm.model.ptg000005l.388 HCH3g1129 541857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1129 500 CDD bZIP_HBP1b-like 196 247 - -
HCH3g1129 500 MobiDBLite consensus disorder prediction 100 119 - -
HCH3g1129 500 Coils Coil 215 242 - -
HCH3g1129 500 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 238 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g1129 500 SUPERFAMILY Leucine zipper domain 196 237 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g1129 500 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 199 214 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g1129 500 ProSiteProfiles DOG1 domain profile. 261 469 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH3g1129 500 MobiDBLite consensus disorder prediction 163 197 - -
HCH3g1129 500 Pfam Seed dormancy control 279 353 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
HCH3g1129 500 MobiDBLite consensus disorder prediction 163 192 - -
HCH3g1129 500 FunFam BZIP family transcription factor 195 244 - -
HCH3g1129 500 Gene3D - 195 246 - -
HCH3g1129 500 SMART brlzneu 192 258 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g1129 500 MobiDBLite consensus disorder prediction 101 119 - -
HCH3g1129 500 PANTHER TRANSCRIPTION FACTOR TGA9 156 473 - -
HCH3g1129 500 Pfam bZIP transcription factor 195 236 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1264 HCH-Chr2:54915243 HCH3g1129 HCH-Chr3:34951690 4.10E-151 dispersed
HCH3g1129 HCH-Chr3:34951690 HCH9g1309 HCH-Chr9:41872209 3.10E-93 dispersed
HCH3g1129 HCH-Chr3:34951690 HCH11g0584 HCH-Chr11:10875704 1.20E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33362 PF14144 DOG1 1.20E-30 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1129 K14431 - csv:101204604 742.265