Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1132 ATGGCAGTCACTGCATCGCTACAATTCATACGATTTCCGACTCACTCAGTTTCCTCATCCTCACCCTCACCCTCACCCTCACCCTCACACCACCTTCTCATTTCGGAGCTCGGTCGATCTTCATGGCTCCCCTCTCTGCAAAAGAGCAGGATCTCGTTGGAACTTCATTTTTCTTTAAAAACAAAATGTTTTTCCATGTCCACTCAAGAGGATCAATCTAAATGGACTGAATCTGAAACCATTCCTTCTGATGATGTTCACCAACGGCCTGATCATAATCATGATATTGATGTGCGGCAACAGAGTTCTGCTGCTTCTTCGCAGAGGATTTCTTCCCCTCCGCCAAGTGATTATCTCTCCATTTCTATCCGGGAACCGGTTTATGAGGTGTTAGAAGTTAAGTCGGATGGAAAAGTATCTACTAGGAAGGTTAACAGACGCCAGTTACTGAAGTCAAGTGGTCTCCGCCCACGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACTAACTCAATGCCTTCATTACTGGTTCGTGAACATGCTATATTGCTTAATCTGGGTTCACTGCGAGCAATAGCAATGCAAGATTGTGTCCTCGTATTTGATTATAACCGTAAAGGAGGACAAGCTTTTATTGAAACATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGGACCAACAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACACAGCTTTTGGAGCAGCGACTCATGAAAGTGGAACCACGTGTTCAAGCTTTACTTGAAGTATTGCCCAACAAATTAACTGGTGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACTTTGGTTGAATTGGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTTGAGGATCCGGAGGAAATACGACGTATCTGTATTATGGGAAAAAACTGTACCCTTAATAAAATAAATGATGATATGGAGTGCTCGCTTCCTTTGGATAAGCAGATTGCTGATGAAGAGGAGGAAGAAATAGAAATGCTCTTGGAAAATTATCTTCAGAGATGTGAATCTTGTCATGGTCAGGCTGAGAGACTTCTGGATTCTGCAAAAGAAATGGAAGATTCCATTGCTGTCAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGGGTGGAATTACTTCTCCAAGTCGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGCATCTTTGGCATGAATTTAAGGTCATACCTGGAAGAACATGTGTTCGCCTTTTGGTTAACGACAGCCGGGATAATCGTTGGTGCTGTTGTGGCATTCTTTCTCATGTATTGGTATCTCAGAGTTAGGAGAATTCTATAA 1374 43.16 MAVTASLQFIRFPTHSVSSSSPSPSPSPSHHLLISELGRSSWLPSLQKSRISLELHFSLKTKCFSMSTQEDQSKWTESETIPSDDVHQRPDHNHDIDVRQQSSAASSQRISSPPPSDYLSISIREPVYEVLEVKSDGKVSTRKVNRRQLLKSSGLRPRDVRSVDPSLFLTNSMPSLLVREHAILLNLGSLRAIAMQDCVLVFDYNRKGGQAFIETLLPRLNPKNMNGGPTMPFELEVVEAALLSRTQLLEQRLMKVEPRVQALLEVLPNKLTGDVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPEEIRRICIMGKNCTLNKINDDMECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYWYLRVRRIL 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36072754 36127707 + evm.model.ptg000005l.385 HCH3g1132 541860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1132 457 Pfam Magnesium transporter MRS2-like 134 387 - -
HCH3g1132 457 Coils Coil 337 357 - -
HCH3g1132 457 MobiDBLite consensus disorder prediction 77 98 - -
HCH3g1132 457 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 393 449 IPR045863 -
HCH3g1132 457 Gene3D - 121 204 - -
HCH3g1132 457 Gene3D Magnesium transport protein CorA, transmembrane region 205 388 - -
HCH3g1132 457 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 104 456 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH3g1132 457 MobiDBLite consensus disorder prediction 68 118 - -
HCH3g1132 457 FunFam Magnesium transporter MRS2-11, chloroplastic 206 388 - -
HCH3g1132 457 CDD Mrs2_Mfm1p-like 130 456 IPR039204 -
HCH3g1132 457 MobiDBLite consensus disorder prediction 99 118 - -
HCH3g1132 457 FunFam Magnesium transporter MRS2-11, chloroplastic 123 204 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1132 K16075 - csv:101219314 647.506