Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1132 ATGGCAGTCACTGCATCGCTACAATTCATACGATTTCCGACTCACTCAGTTTCCTCATCCTCACCCTCACCCTCACCCTCACCCTCACACCACCTTCTCATTTCGGAGCTCGGTCGATCTTCATGGCTCCCCTCTCTGCAAAAGAGCAGGATCTCGTTGGAACTTCATTTTTCTTTAAAAACAAAATGTTTTTCCATGTCCACTCAAGAGGATCAATCTAAATGGACTGAATCTGAAACCATTCCTTCTGATGATGTTCACCAACGGCCTGATCATAATCATGATATTGATGTGCGGCAACAGAGTTCTGCTGCTTCTTCGCAGAGGATTTCTTCCCCTCCGCCAAGTGATTATCTCTCCATTTCTATCCGGGAACCGGTTTATGAGGTGTTAGAAGTTAAGTCGGATGGAAAAGTATCTACTAGGAAGGTTAACAGACGCCAGTTACTGAAGTCAAGTGGTCTCCGCCCACGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACTAACTCAATGCCTTCATTACTGGTTCGTGAACATGCTATATTGCTTAATCTGGGTTCACTGCGAGCAATAGCAATGCAAGATTGTGTCCTCGTATTTGATTATAACCGTAAAGGAGGACAAGCTTTTATTGAAACATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGGACCAACAATGCCATTTGAACTTGAGGTTGTTGAAGCTGCATTGCTTTCACGAACACAGCTTTTGGAGCAGCGACTCATGAAAGTGGAACCACGTGTTCAAGCTTTACTTGAAGTATTGCCCAACAAATTAACTGGTGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACTTTGGTTGAATTGGGTTCCAGGGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTTGAGGATCCGGAGGAAATACGACGTATCTGTATTATGGGAAAAAACTGTACCCTTAATAAAATAAATGATGATATGGAGTGCTCGCTTCCTTTGGATAAGCAGATTGCTGATGAAGAGGAGGAAGAAATAGAAATGCTCTTGGAAAATTATCTTCAGAGATGTGAATCTTGTCATGGTCAGGCTGAGAGACTTCTGGATTCTGCAAAAGAAATGGAAGATTCCATTGCTGTCAATTTGAGCTCGCGGCGACTAGAGGTTAGCAGGGTGGAATTACTTCTCCAAGTCGGGACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGCATCTTTGGCATGAATTTAAGGTCATACCTGGAAGAACATGTGTTCGCCTTTTGGTTAACGACAGCCGGGATAATCGTTGGTGCTGTTGTGGCATTCTTTCTCATGTATTGGTATCTCAGAGTTAGGAGAATTCTATAA 1374 43.16 MAVTASLQFIRFPTHSVSSSSPSPSPSPSHHLLISELGRSSWLPSLQKSRISLELHFSLKTKCFSMSTQEDQSKWTESETIPSDDVHQRPDHNHDIDVRQQSSAASSQRISSPPPSDYLSISIREPVYEVLEVKSDGKVSTRKVNRRQLLKSSGLRPRDVRSVDPSLFLTNSMPSLLVREHAILLNLGSLRAIAMQDCVLVFDYNRKGGQAFIETLLPRLNPKNMNGGPTMPFELEVVEAALLSRTQLLEQRLMKVEPRVQALLEVLPNKLTGDVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPEEIRRICIMGKNCTLNKINDDMECSLPLDKQIADEEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYWYLRVRRIL 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36072754 36127707 + evm.model.ptg000005l.385 HCH3g1132 541860

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1132 457 Pfam Magnesium transporter MRS2-like 134 387 - -
HCH3g1132 457 Coils Coil 337 357 - -
HCH3g1132 457 MobiDBLite consensus disorder prediction 77 98 - -
HCH3g1132 457 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 393 449 IPR045863 -
HCH3g1132 457 Gene3D - 121 204 - -
HCH3g1132 457 Gene3D Magnesium transport protein CorA, transmembrane region 205 388 - -
HCH3g1132 457 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 104 456 IPR039204 GO:0009941(PANTHER)|GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH3g1132 457 MobiDBLite consensus disorder prediction 68 118 - -
HCH3g1132 457 FunFam Magnesium transporter MRS2-11, chloroplastic 206 388 - -
HCH3g1132 457 CDD Mrs2_Mfm1p-like 130 456 IPR039204 -
HCH3g1132 457 MobiDBLite consensus disorder prediction 99 118 - -
HCH3g1132 457 FunFam Magnesium transporter MRS2-11, chloroplastic 123 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1132 K16075 - - csv:101219314 647.506
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0297 . 1 449 MRS2 Gene Family AT1G16010 83.1 2.3e-204 708.4
HCH4g0153 . 6 383 MRS2 Gene Family AT1G16010 55.8 1.6e-112 403.3
HCH5g0064 . 27 386 MRS2 Gene Family AT1G16010 50.3 4.6e-88 322.0
HCH6g1542 . 1 366 MRS2 Gene Family AT5G64560 81.9 1.6e-161 565.8
HCH5g0064 . 1 372 MRS2 Gene Family AT5G64560 70.7 8.6e-136 480.3
HCH7g0748 . 36 497 MRS2 Gene Family AT3G19640 67.9 4.1e-159 558.1
HCH11g0836 . 1 449 MRS2 Gene Family AT3G58970 64.6 1.6e-146 516.2
HCH4g0153 . 6 383 MRS2 Gene Family AT2G03620 71.4 1.1e-142 503.4
HCH6g0297 . 13 449 MRS2 Gene Family AT2G03620 52.5 2.5e-112 402.5
HCH6g1542 . 1 328 MRS2 Gene Family AT5G09690 76.2 6.2e-127 450.7
HCH5g0064 . 1 334 MRS2 Gene Family AT5G09690 66.7 4.6e-114 407.9
HCH6g0297 . 39 385 MRS2 Gene Family AT5G09690 50.4 4.1e-78 288.5
HCH6g1542 . 12 288 MRS2 Gene Family AT5G09720 67.0 8.5e-91 330.5
HCH5g0064 . 33 294 MRS2 Gene Family AT5G09720 62.2 4.9e-78 288.1
HCH6g0297 . 1 449 MRS2 Gene Family AT1G80900 81.8 1.3e-199 692.6
HCH4g0153 . 6 383 MRS2 Gene Family AT1G80900 54.8 5.0e-111 398.3
HCH3g1132 . 117 456 MRS2 Gene Family AT5G22830 82.6 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41