Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1134 ATGTCCCGTCGTGGTGGTGGTGGTGGTGGTCGCCGGCCTGAAGGCCGTGGAGGACAACAACCTTCTCCAGCAGTATATCAGTCTTCTCAGCCACGCGGCGGCGGCGGCGGCGGCGGCGATGGTGGAGGAAGAGGCAGAGGTCGAGGAGGAAGAGGAGAAAGAGGCAGAGGTCAGGGAGGATTTGCTCCTTCTACCACGCCTCCACCGTCAATGGCTCCAGTCACTTCCTACACTCCTCCTCCAAATCCTTCACCAGGCGCTTCTTCTTCGTCTTCAGTAACTGCTCCTCCGAGTATCGAGGCAGAGGTCAAGAATCTTACACTGACTCCGGCAATGACGCCTCCAACATCTTCCAAGGCTCTGGTCCCACCTAAACGACCAGGTTATGGCAGAGCTGGGAGAAAAGTAATCGTTCGTGCTAATCACTTCCTGGTTGAAGTTGCTGATAAAGATCTGTATCATTATGATGTTTCAATTACTCCAGAGGTTACCTCCAAGAAAGTGTGTAGAGATATAATTGGTCAACTTGTGGAAATGTACAGAGAGTCTCATTTAGGTCAAAGGTTTTTGGCTTATGATGGAAGAAAAAGTGTTTATGTTGCTGGACAACTTCCTTTCTCTTCCAGAGAGTTTCTTATCAAATTGGTTGATAGTGATAAACCTGGACCTTCTTCTTCATCATCAACTAGAAAAAGAAAAGAACGTGAATTCAAAGTGGCTATTAAATTTGCCTCCAAGCCAGATTTACATCATCTGCAACAGTTTTTAAAGGGGAGACAACAAGATGCCCCTCAAGAAACAATACAAGTTCTTGATGTGGTTTTGAGAACTCATCCTTCTCTCATATACACTGTTGTGGGAAGGTCATTTTTCTCAATTAATTTAGGAACTAAGGGTGATCTTGGAAATGGTGTCGAATATTGGAGAGGATATTATCAAAGTTTACGACCGGTCCAGATGGGATTGTCACTCAATATCGATGTTTCAGCAAGGTCTTTTTATGAATCAATACTTGTCACAGACTATGTTGCCAAGCACTTCAATCTCAGGAATTTCTCAAAGCCATTATCCGATCATGATCGCCTGAAGATTAGAAGAGTACTGAAGGGTGTGAAGGTGTCATTAACTTACCGGGAGTATGCAAGAACATACAAAATTACCGGGATATCCCAAGAACCATTGAGCAAATTGACATTTTCTCTTGATGATAAGAAAAAAAAGACATCGGTGGTTCAATACTTCCATGAAAGATATGGTGTTGTTCTCAAGTTTACATCCCTTCCTGCTCTACAAGCTGGCACTGATTCAAACCCTGTCTATTTGCCTATGGAGGTTTGTAAAATTGTTGCTGGACAGAGATACACCAAAAAGTTGAATGAACGGCAAGTAACTGAGATGTTGAGAGCGACATGCCAGCGACCTTTAGATAGGCAAAGAAGTATAGTTGAGATGGTTGAACATAATGATTATGACCATAAAGATGTTGTTAAGGATTTTGGAATCCAAGTTAGACAACAACTATGTGAAGTTGATGCCCGGGTTCTACCACCCCCCATGCTGAAATATCATGACACAGGTAGAGAATCAAGAGTTGAGCCAAGGATGGGTCAATGGAATATGATTAATAAGAAAATGATTAATGGTGGAAGAGTAGATTATTGGACGTGTGTGAACTTTTCTTCACGGATGGATCCAGGCTTAGCACCTTACTTTTGCGAGCAGTTGGTTGAGATGTGCATTAGCAAAGGAATGGTTTTCAATCGTAGCCCACTGGTTCAAATAAGAACAGTAAATGCAAATCAAATTGAAGGCGCCCTCGAGGAGGTTCACAAACAGTCAGTAGCTCAACTAAGTAGTATGGGACAGCAGGGGAAGTGCCTTCAGCTGTTAATAATTATTTTACCTGATGTAACTGGTTCATACGGGAAGATAAAACGTGTATGTGAGACCGAGCTGGATATTGTTTCTCAATGTTGCCAGCCAAGGCAGGTGCAGAAAATGCAGAAACAATATCTTGAAAACGTTTCTCTAAAAATTAACGTGAAGGTTGGTGGTAGAAACACTGTTTTAAGTGATGCCATTCAGAAGAAGATTCCTCTGGTAACTGATCTACCAACAATCATCTTTGGAGCGGATGTAACCCATCCACAACCTGGAGAGGACTCTAGCTCTTCAATAGCAGCTGTTGTGGCATCAATGGACTGGCCAGAGGTGACAAAGTACAGAGGTATTGTTTCTGCTCAGGCTCATCGTGAGGAAATCATCCAGGATCTATATAAAACAATTCAAGACCCTCAAAGGGGGTTGGTGCATGCTGGAATAATAAGAGAACATTTGATTGCTTTTAAAAGATCAACAAATTTGAAGCCTCATAGAATTATATTCTACAGAGATGGTGTAAGTGAAGGGCAGTTCAGTCAGGTTTTGCTCTATGAGATCGATGCAATTAGAAAGGCATGTGCTTCACTTGAAGAAGGTTACCAACCTCGCATAACTTTTGTAGTGGTGCAAAAGAGGCACCACACTCGTCTTTTTCCCACCAGTGGAGATGTAGACAGAAGCGGAAACATACTCCCAGGGACTGTGATTGACACTAAAATTTGTCACCCTACGGAGTTTGATTTTTATCTGAACAGCCATGCTGGAATTCAGGGAACATCTCGACCAACACATTATCATGTATTGTATGATGAAAATAACTTCAGTGCTGATGGGTTGCAAATGCTCACAAATAATCTCTGTTACACGTATGCAAGGTGCACCCGGTCTGTTTCCATAGTGCCTCCTGCATATTATGCTCATTTAGCAGCATTCCGAGCACGATATTACATCGAGGGTGATACATCAGACAGTGGTTCCACGAGGAGTGGTGGTGGTGGTAGGAATATGGAGGTTCGACCACTGCCAATTGTGAAAGATCATGTCAAAGATGTTATGTTTTACTGTTGA 2949 42.86 MSRRGGGGGGRRPEGRGGQQPSPAVYQSSQPRGGGGGGGDGGGRGRGRGGRGERGRGQGGFAPSTTPPPSMAPVTSYTPPPNPSPGASSSSSVTAPPSIEAEVKNLTLTPAMTPPTSSKALVPPKRPGYGRAGRKVIVRANHFLVEVADKDLYHYDVSITPEVTSKKVCRDIIGQLVEMYRESHLGQRFLAYDGRKSVYVAGQLPFSSREFLIKLVDSDKPGPSSSSSTRKRKEREFKVAIKFASKPDLHHLQQFLKGRQQDAPQETIQVLDVVLRTHPSLIYTVVGRSFFSINLGTKGDLGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYESILVTDYVAKHFNLRNFSKPLSDHDRLKIRRVLKGVKVSLTYREYARTYKITGISQEPLSKLTFSLDDKKKKTSVVQYFHERYGVVLKFTSLPALQAGTDSNPVYLPMEVCKIVAGQRYTKKLNERQVTEMLRATCQRPLDRQRSIVEMVEHNDYDHKDVVKDFGIQVRQQLCEVDARVLPPPMLKYHDTGRESRVEPRMGQWNMINKKMINGGRVDYWTCVNFSSRMDPGLAPYFCEQLVEMCISKGMVFNRSPLVQIRTVNANQIEGALEEVHKQSVAQLSSMGQQGKCLQLLIIILPDVTGSYGKIKRVCETELDIVSQCCQPRQVQKMQKQYLENVSLKINVKVGGRNTVLSDAIQKKIPLVTDLPTIIFGADVTHPQPGEDSSSSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKTIQDPQRGLVHAGIIREHLIAFKRSTNLKPHRIIFYRDGVSEGQFSQVLLYEIDAIRKACASLEEGYQPRITFVVVQKRHHTRLFPTSGDVDRSGNILPGTVIDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENNFSADGLQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDTSDSGSTRSGGGGRNMEVRPLPIVKDHVKDVMFYC 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 36351723 36356706 - evm.model.ptg000005l.383 HCH3g1134 541862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1134 982 Gene3D - 514 691 - -
HCH3g1134 982 ProSiteProfiles PAZ domain profile. 338 450 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH3g1134 982 CDD Piwi_ago-like 495 944 IPR045246 -
HCH3g1134 982 Pfam N-terminal domain of argonaute 134 275 IPR032474 -
HCH3g1134 982 Gene3D - 698 982 IPR036397 GO:0003676(InterPro)
HCH3g1134 982 SMART DUF1785_2 284 336 IPR014811 -
HCH3g1134 982 ProSiteProfiles Piwi domain profile. 629 945 IPR003165 GO:0003676(InterPro)
HCH3g1134 982 SMART Piwi_a_2 629 945 IPR003165 GO:0003676(InterPro)
HCH3g1134 982 Pfam PAZ domain 362 467 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH3g1134 982 MobiDBLite consensus disorder prediction 66 86 - -
HCH3g1134 982 Gene3D paz domain 331 454 - -
HCH3g1134 982 FunFam Argonaute 10 514 691 - -
HCH3g1134 982 SUPERFAMILY Ribonuclease H-like 627 945 IPR012337 -
HCH3g1134 982 CDD PAZ_argonaute_like 339 449 - -
HCH3g1134 982 Pfam Piwi domain 630 944 IPR003165 GO:0003676(InterPro)
HCH3g1134 982 Pfam Argonaute linker 1 domain 286 335 IPR014811 -
HCH3g1134 982 FunFam protein argonaute 10-like 697 982 - -
HCH3g1134 982 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 126 945 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
HCH3g1134 982 Pfam Argonaute linker 2 domain 476 522 IPR032472 -
HCH3g1134 982 SUPERFAMILY PAZ domain 333 490 IPR036085 GO:0005515(InterPro)
HCH3g1134 982 Pfam Mid domain of argonaute 533 611 IPR032473 -
HCH3g1134 982 SMART PAZ_2_a_3 339 472 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
HCH3g1134 982 MobiDBLite consensus disorder prediction 1 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1134 HCH-Chr3:36351723 HCH7g1262 HCH-Chr7:45486412 3.20E-299 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1134 K11593 - csv:116403995 1380.93