Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1168 ATGGGAATGGATGAATCTGAAAATGTCAACAAGGGAAGAAGAGAAAAGGCGAAGGTGGTGGTGATTATGGGGCCTACCGGTTCAGGGAAGTCCCGTCTCGCCATCGATTTGGCTTCCCACTTCCCCGTAGAGATTATCAATGCGGACTCTATGCAGGTTTATCATGGATTGGACGTTCTCACTAATAAAGTCCCCCTCGAAGACCAAAAGGGAGTGCCGCATCATCTATTAGGGACAGTGAGCCCTAACGTTGAATTCACAGCCAAAGATTTTCGAGATTCTGCCACCACTGTCATTGAAGACATATTATCACGGAATTGCTTGCCTATTATAGTGGGTGGAACAAATTATTATATACAGGCTCTTGTAAGCCCCTTTCTTCTGGATGATTCCACAGAACTCATGGGTGGAAATTGCTCAAGCAATCCTGGAGATGAAGTGCCCATTAATGAGTTGGATGGGGGAAGAGATGATTTGAAGTATGAACATAACCATCTTAAAGAGATTGATCCAGTTGCGGCTAACCGAATTCATCCTAATAACCACAGAAAAATAAATCAATACCTTAGTTTGTATTTTCGCACTGGTGTTCTTCCCAGTACACTTTTTCAAGGAAAGGCTGCTGAGAACTGGGGTCAAGCTGATAGTTTCAGATATAATTGCTGCTTGATATGTGTTGATGCATCTGTTCCTCAACTTGACCAACATGTTGATTCTAGAGTAGATTGTATGGTGGCTGCTGGATTACTTGATGAGGTGTATGACATTTACAATGTGAATGCAAACTACACTAGAGGATTGCGTCAAGCTATTGGTGTTCGGGAATTTGAAGAGTTTTTGAGATTATATGTACTTGGGGGAAGATGTGATAAAGACAGTGATGTGCTCAGCCACATAAATTCAATGGACAACGATATGATTTTGAAAGAAGATATGAAGTCAATTTTAAATACATCAAGTGATGACCAATCTAGTTTACTATTGAAAGATGCCATAGCAAATGTAAAGTTGAATACTAGAAGACTTGTTCGTCGTCAGAGGAGGCAGTTAAAAAGACTAGAGAATTTGTTTGGATGGAAGATACACTATATTGATGCCACGGAATACATATCATGCAAAGTCGAGGGTTCATGGGCTGCACAAGTTGTTGAACCTGCAGTCCAGATAATTAGATCTTTCCTTGAGGATAGTTGTTCAGTGACCGAGACCGTTGCCCATGATAGTCCTGGGAAAAGAATCCAAAATGACTTGTGGACTCAATATATATGCCTGGCTTGTGGAAATAAAGTTCTGAGAGGAGCACATGAATGGGAGCAGCACAATCAAGGCCGTGTGCATCGAAAACGAATATCCCGACTTAAGAAATCTGGAGGGGTTTCCTTGCTACAACAACCACCACCTCAAAAGTAA 1410 41.49 MGMDESENVNKGRREKAKVVVIMGPTGSGKSRLAIDLASHFPVEIINADSMQVYHGLDVLTNKVPLEDQKGVPHHLLGTVSPNVEFTAKDFRDSATTVIEDILSRNCLPIIVGGTNYYIQALVSPFLLDDSTELMGGNCSSNPGDEVPINELDGGRDDLKYEHNHLKEIDPVAANRIHPNNHRKINQYLSLYFRTGVLPSTLFQGKAAENWGQADSFRYNCCLICVDASVPQLDQHVDSRVDCMVAAGLLDEVYDIYNVNANYTRGLRQAIGVREFEEFLRLYVLGGRCDKDSDVLSHINSMDNDMILKEDMKSILNTSSDDQSSLLLKDAIANVKLNTRRLVRRQRRQLKRLENLFGWKIHYIDATEYISCKVEGSWAAQVVEPAVQIIRSFLEDSCSVTETVAHDSPGKRIQNDLWTQYICLACGNKVLRGAHEWEQHNQGRVHRKRISRLKKSGGVSLLQQPPPQK 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 41572755 41613044 - evm.model.ptg000005l.349 HCH3g1168 541896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1168 469 FunFam tRNA dimethylallyltransferase 416 458 - -
HCH3g1168 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 125 IPR027417 -
HCH3g1168 469 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 19 281 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
HCH3g1168 469 Gene3D - 151 206 - -
HCH3g1168 469 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 18 402 IPR039657 GO:0005739(PANTHER)|GO:0006400(PANTHER)|GO:0052381(PANTHER)
HCH3g1168 469 Coils Coil 336 356 - -
HCH3g1168 469 Gene3D Classic Zinc Finger 418 459 - -
HCH3g1168 469 Gene3D - 16 417 IPR027417 -
HCH3g1168 469 Pfam IPP transferase 52 351 - -
HCH3g1168 469 Hamap tRNA dimethylallyltransferase [miaA]. 19 395 IPR018022 GO:0008033(InterPro)|GO:0052381(InterPro)
HCH3g1168 469 SUPERFAMILY beta-beta-alpha zinc fingers 405 454 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1168 HCH-Chr3:41572755 HCH6g1623 HCH-Chr6:49316599 3.70E-48 dispersed
HCH3g1168 HCH-Chr3:41572755 HCH4g0931 HCH-Chr4:5960343 2.00E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1168 K00791 - csv:101202758 687.952