Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g1177 | ATGGATTTCGGAGAGGCAACTTTGCTGCTGCAATCATTGCCCACAACAATCGCCATCTTCTTCTTCTCCTTCACTGCTCTTTTCTCCATTTTCTCTTTCTCTCTTTTCATCTTGAGGCTCAAACCATGGTGTAACTGTGATGTTTGCTGTAGCTATCTATCTGGAAATTGGGTGAAGGAATTTGACAATCTCTGTGATTGGTATACTCATCTTTTGCGGAAATCGACGTCCGGAACCGTTCATGTTCATGTCCTCAGTAATATCATTACGGCCAACCCTGAAAACGTTGAGTATATTTTGAAAACAAAATTTGAAAATTATCCAAAAGGAAAACCCTTCTCTTCTATCCTTGGTGATCTTCTTGGCCGTGGTATATTCAATGTTGACGGCGATTCATGGCGTTTTCAGCGTAAAATGGCTAGTCTCGAACTCGGGAGTATTTCGGTTCGGTCTCATGCTTTCGAAATCGTTTCCTCTGAGATTCGATCGAGGCTAATCCCTCTATTGAATTCGGTTTCGATTACGGGAGATGTTTTAGATTTACAAGACGTTTTTCGTCGGTTTTCGTTCGATAACATTTGTAGATTCTCATTCGGATTAGACCCAGGTTGTCTGAAAGTTTCGCTTCCCATTTCTGAATTCGCTACAGCATTCGATCTGGCGTCGAGATTGTCTGCCGAGCGAGCCATGAGTGCGTCGCCGTTGATGTGGAAAATCAAGAGAGTTTTCAATATTGGATCAGAAAAGAAGCTCAAGGATGCCATTAAATTAGTGAACAATCTAGCAGAAGAGATGATTAACCGTAGGCGTGAAATGGGGTTTTCTCACAGCAACGATCTTCTTTCGCGGTTCATGACTTCCATGGACGATGATCGGTATCTGCGAGACATAGTAATCAGCTTCTTATTAGCTGGCCGAGACACGGTGGCCTCAGCGTTGACCAGCTTCTTCTGGCTTCTCTCACATCACCCAGAAGTAGAATCCAAGATTATCGAAGAGTCAAACCGGGTCATGGGTTCGGATAGCGATATCGCGAGCTTTGAGAATTTAAGAGAGATGCATTATCTGCATGCAGCGGTCTACGAAAACATGAGGCTTTTCCCACCTGTGCAATTCGATTCCAAGTTTGCTCTGGAAGATGATATTTTGCCTGACGGCACGTTTATCCAAAAGGGTACTAGAGTAACTTACCACCCTTATGCGATGGGTCGGATGGAGCGGGTATGGGGCCCCGATTGTCTTCAATTCAAGCCTGAAAGATGGTTGAAAGACGGCAGTTTCTCGCCCGAAAACCCGTTTAAGTTTCCGGTTTTTCAAGCCGGTTTGAGGATTTGTTTGGGGAAGGAGATGGCGGTGATGGACGTGAAAAGTGTGACGGTTGCTTTAGTTCGAAAGTTTCAAATCCGGTTGTCTGGATCCGACCGGTTTGCCCGGTTTTCTCCGGGTCTCACGGCCAGTTTTAGAGATGGCTTACCGGTTCAAATTCAAGAACGAAGCAAAGCAAATTGA | 1509 | 44.8 | MDFGEATLLLQSLPTTIAIFFFSFTALFSIFSFSLFILRLKPWCNCDVCCSYLSGNWVKEFDNLCDWYTHLLRKSTSGTVHVHVLSNIITANPENVEYILKTKFENYPKGKPFSSILGDLLGRGIFNVDGDSWRFQRKMASLELGSISVRSHAFEIVSSEIRSRLIPLLNSVSITGDVLDLQDVFRRFSFDNICRFSFGLDPGCLKVSLPISEFATAFDLASRLSAERAMSASPLMWKIKRVFNIGSEKKLKDAIKLVNNLAEEMINRRREMGFSHSNDLLSRFMTSMDDDRYLRDIVISFLLAGRDTVASALTSFFWLLSHHPEVESKIIEESNRVMGSDSDIASFENLREMHYLHAAVYENMRLFPPVQFDSKFALEDDILPDGTFIQKGTRVTYHPYAMGRMERVWGPDCLQFKPERWLKDGSFSPENPFKFPVFQAGLRICLGKEMAVMDVKSVTVALVRKFQIRLSGSDRFARFSPGLTASFRDGLPVQIQERSKAN | 502 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 42171642 | 42173612 | + | evm.model.ptg000005l.340 | HCH3g1177 | 541905 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g1177 | 502 | CDD | CYP86A | 88 | 491 | - | - | |
| HCH3g1177 | 502 | PRINTS | P450 superfamily signature | 436 | 445 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PRINTS | P450 superfamily signature | 445 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PRINTS | P450 superfamily signature | 358 | 369 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PRINTS | P450 superfamily signature | 304 | 321 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | Pfam | Cytochrome P450 | 87 | 472 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PANTHER | CYTOCHROME P450 | 41 | 490 | - | - | |
| HCH3g1177 | 502 | SUPERFAMILY | Cytochrome P450 | 55 | 498 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PRINTS | E-class P450 group I signature | 293 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PRINTS | E-class P450 group I signature | 445 | 468 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PRINTS | E-class P450 group I signature | 435 | 445 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | PRINTS | E-class P450 group I signature | 313 | 339 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1177 | 502 | Gene3D | Cytochrome P450 | 50 | 502 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g1177 | HCH-Chr3:42171642 | HCH9g1269 | HCH-Chr9:37181708 | 2.70E-121 | dispersed | |
| HCH11g0397 | HCH-Chr11:3913347 | HCH3g1177 | HCH-Chr3:42171642 | 1.70E-182 | wgd | |
| HCH3g1177 | HCH-Chr3:42171642 | HCH9g0504 | HCH-Chr9:3215122 | 7.50E-188 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH3g1177 | K20624 | - | csv:101207724 | 747.658 |