Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1180 ATGGGTTTGAGAAACCACATAGCAGAAGAAAACACCTTCTGCCTTCCATCTCCAACTTTCATAGAATGGCTAAAACCATATTCTCCTAATTCCTCACCATGTGATTCTCTCTCTTATTCATCTTCTTCTCTCTCGTCCTCAGTGACAAATGACCAAGATTTGATCTCCAAGACTATCCGATGCTTGCCACTTTTTACAGAGACGAAGATATCGATGAAGAAGGAAGAAGTGATTCAAGACGAAAGGTCATATCTTGGAATTAAAGAAGAAGATAATGATATGGAGAAGATTGAAATGGGTTTGTGCATTGGGCTTCCAAATGTAGAAGATATTTCTGGGGTTGTTAAGAATACAAATGTTTCTATTAAGAAAGAAGAAAGCGTGAAGAAAAGCTTTGATGGGTTCTCTAATTTTAACTCAGAGGGTAGGTTTTGGATCCCAACTCCTGCCCAGATCCTTATTGGCCCCATGCAATTTGCTTGCTCCATTTGCAACAAGTCCTTTAATAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCTGAGTACAGAAAGGGACCAGAATCGTTGAGGGGGACGCAGCCTGCCGCAATGCTAAGGCTGCCATGTTATTGCTGTGCTCAAGGATGCAAGAACAACATTAACCATCCAAGAGCAAAGCCATTGAAAGACTTCAGGACCCTTCAAACACACTATAAAAGAAAGCATGGATCTAAGCCTTTTATTTGCAGGAAATGTGGGAAAACGTTGGCTGTGAAAGGAGACTGGAGAACCCACGAAAAGAATTGTGGGAAATTGTGGTATTGTTCTTGTGGTTCAGATTTCAAACACAAAAGATCCCTCAAAGACCATATCAGATCCTTTGGAAAAGGCCATTCTCCATTCCGTCCTGCCGATGGTTTTCAAGATCATGACAAGGAATGCCTTACTGGTTCAGATGAAGATGAGTTTACTCGTTAA 966 40.99 MGLRNHIAEENTFCLPSPTFIEWLKPYSPNSSPCDSLSYSSSSLSSSVTNDQDLISKTIRCLPLFTETKISMKKEEVIQDERSYLGIKEEDNDMEKIEMGLCIGLPNVEDISGVVKNTNVSIKKEESVKKSFDGFSNFNSEGRFWIPTPAQILIGPMQFACSICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFICRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHSPFRPADGFQDHDKECLTGSDEDEFTR 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 42453304 42454737 - evm.model.ptg000005l.337 HCH3g1180 541908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1180 321 Gene3D Classic Zinc Finger 158 181 - -
HCH3g1180 321 FunFam Zinc finger protein WIP2 212 294 - -
HCH3g1180 321 Gene3D Classic Zinc Finger 239 296 - -
HCH3g1180 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 186 IPR013087 -
HCH3g1180 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 299 IPR013087 -
HCH3g1180 321 SMART c2h2final6 159 181 IPR013087 -
HCH3g1180 321 SMART c2h2final6 243 263 IPR013087 -
HCH3g1180 321 SMART c2h2final6 206 238 IPR013087 -
HCH3g1180 321 MobiDBLite consensus disorder prediction 295 321 - -
HCH3g1180 321 PANTHER ZINC FINGER PROTEIN WIP2 18 309 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
HCH3g1180 321 SUPERFAMILY beta-beta-alpha zinc fingers 151 182 IPR036236 -
HCH3g1180 321 SUPERFAMILY beta-beta-alpha zinc fingers 228 265 IPR036236 -
HCH3g1180 321 ProSitePatterns Zinc finger C2H2 type domain signature. 161 181 IPR013087 -
HCH3g1180 321 MobiDBLite consensus disorder prediction 299 321 - -
HCH3g1180 321 Pfam Zinc finger, C2H2 type 159 178 IPR013087 -
HCH3g1180 321 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 242 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1180 HCH-Chr3:42453304 HCH4g1190 HCH-Chr4:7956040 2.20E-84 dispersed
HCH3g1180 HCH-Chr3:42453304 HCH2g1387 HCH-Chr2:55650887 6.70E-89 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33366 PF13912 zf-C2H2_6 6.40E-05 CL0361 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1180 - - - 0.0