Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1194 ATGGCTACTTCGTCCATGTACAGCTCCAATGGCGGTATCGGAAACGGGGATGTGCTCAGTTTTGCTCAACAAGTTGTATTAGGGAGGTGGTTTTCTGTGTTTGGCTCTTTCCTTATAATGGCTGGAGCTGGAGGAACTTACCTGTTTGCCTACTTCTCCAAAGACATAAAAGCAACGTTAAAATGTGACCAGACGACATTAAACATGATTGGATTTTACAAAGACCTTGGAGCAAACATTGGCATTAATTCCGGCCTATTGGGAGAGGTAGCGCCAACTTGGTTCGTTCTCCTTGTCGGTGCCGCCTTGAACTTCATAGGTTACTTCAAGATATGGCAGGCCGTCAGCGGAAAGATTGTGAAGCCGACGGTTGGTTTCATTTGCTTTTACATATTAGTAGGAGCAAACTCTCAGAATTTTGCAAATACAGGAGTAATTGTCACGTGTGTGAAGAATTTCCCTGAAAGGAGAGGGGTTCTGCTGGGTTTGTTGAAGGGTTTTGTGGGACTAAGTGGAGCTATAATGACACAGATCTACTTGGCCATTTATGGGAAAGATTCTAAATCTCTGATTCTTCTCATTGCCTGGCTCCCGACTTTGGTTTCTTTGATGTTCGTTTATTCAGTCAAGGAAATGAAATTTGAAAAACACCCTGATGAATTCAGAGTTTTCTATCAATTTCTCTCTGTTACCATCATTCTAGCTTTGTTTCTCGCTGTATTAATCATTATTCAGAGACAAACTCCTTTCGATCACAATGCCCACGTTGCAAGTGTAGTTGCAATTTTGGCATTGCTTTGTCTTCCATTACTGATTGCCATTAGAGAAGAATTGGTCGTCTGGAATCTCAAGAGAAGCTCTGTCAATCCTTTCACGAGAATAAGAATACCTCATCAAATTCACCAACCGTCATCTTCTTCCTCTGCATTACAAGAACCAAACCTGGGAACTAAAAATTCCTTTTTTTCCGACATTTTCAACAAACCAAAAAGAGGAGAAGACTATTCAATTTTGCAAGCGGTTTTCAGCATCGACATGCTCATCATATTCATCACCACGTTAGTTGGAGTCGGATCAAACTTGACCGCCATCGACAATCTCGGCCAAATCGGAGAATCTTATGGTTACCCAGGTGAAACAATTAACGCTTTCATCTCTCTAGTAAGCATATTCAACTTTTCCGGAAGAATCTTCTCTGGATTCGTTTCAGAAATCTTACTAGCAAAATACAAATTTCCCAGACCATTAATGTTGACACTCGTCCTCTTAGTTGCCTCCACCGGCCACTTACTGATAGCCTTCCCATTCAGCAACTCCCTCTACATAGCCTCAGTGATAATAGGATTTACATTAGGATCTCAAGTTCCATTACTATTCGCCATAATTTCAGAGCTTTTTGGGCTAAAACACTACTCTTTATTATTCAACTTTGGACAATTAGCCTGTCCTATTGGATCCTACATTCTGAATGTAATGGTGACCGGTAGGCTTTACGATGAAGGAGCTTTAAAGGCTCTGCCGACGCACGGGACGGAGTTCATTTGCACCGGATATCATTGCTTCGACAAAGCTTTCAGAATCTTGGCATTGCTGACATTTCTTGGAGCTTTGGTATCGATGGTTTTGGTGAAAAGAACAAGCGAGTTTTATAGAGGAGATATATATAAGAAGTTTAGAGAAGATTTGGATACTTTGAAGACAGAAGTGGAGTTTTACGCCGTTGAGGAGAAGAGGACGAGGATTGGGAATTTATTGATTGACAAACGTGACATTCATTACGTAAGGTGA 1788 41.22 MATSSMYSSNGGIGNGDVLSFAQQVVLGRWFSVFGSFLIMAGAGGTYLFAYFSKDIKATLKCDQTTLNMIGFYKDLGANIGINSGLLGEVAPTWFVLLVGAALNFIGYFKIWQAVSGKIVKPTVGFICFYILVGANSQNFANTGVIVTCVKNFPERRGVLLGLLKGFVGLSGAIMTQIYLAIYGKDSKSLILLIAWLPTLVSLMFVYSVKEMKFEKHPDEFRVFYQFLSVTIILALFLAVLIIIQRQTPFDHNAHVASVVAILALLCLPLLIAIREELVVWNLKRSSVNPFTRIRIPHQIHQPSSSSSALQEPNLGTKNSFFSDIFNKPKRGEDYSILQAVFSIDMLIIFITTLVGVGSNLTAIDNLGQIGESYGYPGETINAFISLVSIFNFSGRIFSGFVSEILLAKYKFPRPLMLTLVLLVASTGHLLIAFPFSNSLYIASVIIGFTLGSQVPLLFAIISELFGLKHYSLLFNFGQLACPIGSYILNVMVTGRLYDEGALKALPTHGTEFICTGYHCFDKAFRILALLTFLGALVSMVLVKRTSEFYRGDIYKKFREDLDTLKTEVEFYAVEEKRTRIGNLLIDKRDIHYVR 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43095376 43097163 + evm.model.ptg000005l.323 HCH3g1194 541922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1194 595 Coils Coil 555 575 - -
HCH3g1194 595 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 28 559 - GO:0016020(PANTHER)
HCH3g1194 595 Pfam Nodulin-like 29 274 IPR010658 -
HCH3g1194 595 SUPERFAMILY MFS general substrate transporter 29 547 IPR036259 -
HCH3g1194 595 Gene3D MFS general substrate transporter like domains 339 550 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0829 HCH-Chr11:38907697 HCH3g1194 HCH-Chr3:43095376 1.00E-271 dispersed
HCH3g1194 HCH-Chr3:43095376 HCH3g1200 HCH-Chr3:43674213 1.40E-185 dispersed
HCH3g1194 HCH-Chr3:43095376 HCH3g1196 HCH-Chr3:43434042 5.10E-252 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1194 - - - 0.0