Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1196 ATGGAAATGGCTACGCGGTCGATCTACAGCTCCAACGGCAGTATTAGGAATGGGGATGGGAATATGTTGGGTTTTGTTAAACAAGTGGTATCAGGGAGGTGGTTTACTGTGTTTGGTTCTTTCCTTATAATGGCCGGAGCTGGAGGAACCTACCTTTTTGCCTCCTTCTCCAAAGACATAAAACAAATATTAGAATGTGACCAGACGACATTAAACATGATCGGATTTTACAAAGATCTAGGAGCGAACGTCGGCATTAACTCCGGCCTATTGGGAGAGGTAGCGCCACCGTGGTTAGTCCTCCTCATCGGTGCCGCCTTGAACTTCATTGGTTATTTCAAGATATGGCAGGCTGTGAGCGGAAAGATTGCGAAACCGACGGTTGGTTTCATTTGTTTTTACATATTAATTGGAGCAAACTCTCAGAATTTTGCAAATACAGGAGTAATTGTGAATTGTGTGAAGAATTTCCCTGAAAGGAGAGGGGTTATGTTGGGTTTGTTGAAGGGTTATGTGGGACTAAGTGGAGCTATAATGACACAAATTTACTTGGCCATCTATGGGAATGATCCTAAATCTCTCATTCTTCTCATTGCCTGGCTTCCAACTTTGTTTTCTGTGGTGTTTGTTTATACAATCAGAGAAAAGAGATATGAAAAGCACCCGGAAGAATTCCGAGTTTTCTTTCAATTCCTCTCGGTTGGCATCGTTCTAGCTCTCTTTCTCACCGTAGTAACTATTCTTCAGAGACGCGCTCATTTCAATCACTCTGCTCAAGTTGGAACTGTAATTGCAATTTTGGCTTTGCTTGCTCTTCCATTACTCATTGCCATTAGAGAAGAAAGGGTTCTCTGGAATCTCAATAAACGGTCCGCCAATCCTTTCACAAGAATAGTAATAGATAAGACACCACCACCTCCTCCTCCTCCTCAGATTCAAATTCAACAACCCTCGTTTTCTTCCTCCGGTTCACAAGAACCAAACAAGGAAAAAACAAAATCATTTTTTTCTGATATTTTCAACAAACCAGAAAGAGGAGAAGATTACTCAATTCTTCAGGCAGTTTTAAGCATCGACATGCTTATTATATTCACCACTACCCTAACTGGAGTCGGATCAAGCTTGACAGCCGTTGACAATCTCGGCCAAATCGGAGAATCCCACAAGTACCCAGCTGCAACGATTAAATACTTCATCTCCATTGTAAGCATTTTCAATTTCTTCGGCAGAATCTTTTCTGGATTCGTTTCAGAAATCTTACTCGCAAAATATAAAATTCCCAGACCATTAATGGTGACCTTCGTCCTCTTAGTTGCATGCATAGGCCACCTATTGATAGCCTTTCCAGTCAATGGCTCACTCTACGTAGCCTCAGTGATAATCGGATTTACATTGGGATCTCAAGTTCCATTACTATTCGCCATAATCTCCGAGCTTTTTGGCCTAAAACACTACTCCTTATTGTTCAACGTTGGACAGTTAGCTTGCCCTATTGGATCCTACATTCTAAATGTAATGGTCACTGGTAAGCTTTACGATCAGGCAGCGAGAATGATCGGAAATACGAATATACAAGTTTGCGTGGGAGCTCATTGCTACAGCACAGCTTTCAAAATTTTGACAGTTATGACATTTCTTGGAGCATTGGCATCGTTGGTTTTGGTGAAGAGGACGAGCGCGTTTTATAGAGGTGATATTTATAAGAAATTCAGAGAAGATATGGATACGTTAAAGACGGACGTAGAGTTTTATCCCGTGGAAGAGAAGAAGACGAGAAATGGGAATTATTGA 1791 41.43 MEMATRSIYSSNGSIRNGDGNMLGFVKQVVSGRWFTVFGSFLIMAGAGGTYLFASFSKDIKQILECDQTTLNMIGFYKDLGANVGINSGLLGEVAPPWLVLLIGAALNFIGYFKIWQAVSGKIAKPTVGFICFYILIGANSQNFANTGVIVNCVKNFPERRGVMLGLLKGYVGLSGAIMTQIYLAIYGNDPKSLILLIAWLPTLFSVVFVYTIREKRYEKHPEEFRVFFQFLSVGIVLALFLTVVTILQRRAHFNHSAQVGTVIAILALLALPLLIAIREERVLWNLNKRSANPFTRIVIDKTPPPPPPPQIQIQQPSFSSSGSQEPNKEKTKSFFSDIFNKPERGEDYSILQAVLSIDMLIIFTTTLTGVGSSLTAVDNLGQIGESHKYPAATIKYFISIVSIFNFFGRIFSGFVSEILLAKYKIPRPLMVTFVLLVACIGHLLIAFPVNGSLYVASVIIGFTLGSQVPLLFAIISELFGLKHYSLLFNVGQLACPIGSYILNVMVTGKLYDQAARMIGNTNIQVCVGAHCYSTAFKILTVMTFLGALASLVLVKRTSAFYRGDIYKKFREDMDTLKTDVEFYPVEEKKTRNGNY 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43434042 43435832 - evm.model.ptg000005l.321 HCH3g1196 541924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1196 596 MobiDBLite consensus disorder prediction 298 330 - -
HCH3g1196 596 MobiDBLite consensus disorder prediction 315 330 - -
HCH3g1196 596 Pfam Nodulin-like 33 278 IPR010658 -
HCH3g1196 596 Gene3D MFS general substrate transporter like domains 334 584 IPR036259 -
HCH3g1196 596 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 32 571 - GO:0016020(PANTHER)
HCH3g1196 596 MobiDBLite consensus disorder prediction 300 314 - -
HCH3g1196 596 Pfam Major Facilitator Superfamily 363 558 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
HCH3g1196 596 SUPERFAMILY MFS general substrate transporter 228 560 IPR036259 -
HCH3g1196 596 SUPERFAMILY MFS general substrate transporter 36 274 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1196 HCH-Chr3:43434042 HCH3g1200 HCH-Chr3:43674213 3.30E-182 dispersed
HCH3g1194 HCH-Chr3:43095376 HCH3g1196 HCH-Chr3:43434042 5.10E-252 proximal
HCH3g1196 HCH-Chr3:43434042 HCH3g1197 HCH-Chr3:43477481 8.10E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1196 - - - 0.0