Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1197 ATGGCGGATAATAATTCCTCAGAATGTTTTCAATTCATTACACAAGTAGTACGTGGTCGTTGGTTCTCTGTCTTCTCTTCATTCATGGTCATGATTGGTGCCGGCGCGACTTACATGTTTGGAAACTATTCCAAAGTCATAAAATCTGAATTTAATTACAGCCAAACACAGCTTAACACTATGGGATTTGCTAAAGATCTTGGTTCCAATGCCGGAGTTTTCGCTGGACTTTTTGCCGAGGTAGCTCCGCCGTGGCTTCTCTTCCTTGTCGGCTCATTCCTTAACTTCTTCAGCTACTTTATGATTTGGCTCTCCGTTACTAACCGTATCTCCAAACCTGAATTCTGGCAATTATGTTTTTGTATCTGCATGGCTGCAAATTCACAAAATTTTCCAAACACAGCAGTTTTAGTTTCCAACGTCCGTAATTTCCCTGATAGACGAGGTGTTATCTTAGGGCTTTTAAAGGGTTTTGTTGGACTTGGAGGGGCTGTCATGACACAGGCTTATTTAGCGATCTATGGTCACGAAAATCCATCGAATTTGATTCTTCTTCTTTCATGGTTACCTACAATGGTATCTCTCGTGCTTATGTTTTCAGTCCGAACAATAAAAGAACAAAAACATCCACACGAGCTTAGAATCTTTTACCAGTTTCTTTACGTTGCAATACTTCTAGCTTTGTTTCTCATGGCTTTGACCATTACCCAAAAACAAACTACTTTCACTCAGTCTGCCTATTTTGGTGGCGCCATTGTCATCCTCTGCTTACTATTTTTACCCCTTTTGATCGTCATTAAAGAAGAATTTGTTGTCTTCAAACTCGGTAAAGCCTTCGGTCCAACTTTTTCGATATCGATTGATCAGAAACCTCCGTCAAAAGTTATACCAAGCAAGCTCCCAACTACACTTGAGGAGATAACCGAAGAGCCGCCGACGTGTTTCTCTAGCATATTTAACAAACCGGAAAGAGGAGAAGATTACACCATTTTACAAGCATTGATAAGTAAAGACATGGCTTTCCTTTTCATGGCGACCCTTTGCGGAACTGGATCGACGATTGCGACCATTGACAATCTGGGGCAAATAGGTGAATCACTCGAATACCCTCCACAAGCAATAAGCATATTTGTTTCATTGGTTTCTATACTGAATTTCTTCGGCAGAGTCTTCTCCGGCTTCATGTCGGAAACACTTGTTGTAAAATACAAGATCCCTCGTCCAATGATGTTTTCAATTTTCCTTCTCCTCACCTGCATTGGCCAACTATTAGTCGCCTACCCATCTCCCGGTTCAGTTTATATAGCTTCATTGCTTATTGGATTCGCATTCGGAGCTCAAGTTCCATTGCTTTTTGCTATAATATCTGATTTATTCGGATTAAAACACTATTCGACGTTGTTCAATTGTGGGCAATTAGCAATCCCAATTGGATCATATATACTGAATGTGGATATAATCGGGAGACTATACGATATGGAAGCAGAAAAAGGAGGAGAAATGAAGACGGGGAAGGGGCTAACTTGTATTGGATCTCATTGTTTTAGTGGATCTTTCTCAGTTATAGCGGGCGTCACTTTGTTTGGATCTGTAGTTTCTCTTTTGCTGGCTTTCAGGACGCGAGAGTTTTACAAAGGTGATATTTACAAGAGATTCAGAGAGGATATGTGGATGCCCGAATCGGATGTGGAATTCTATTGCTTAAATGAGAAGAAAAATAATGGCAGATAG 1731 40.55 MADNNSSECFQFITQVVRGRWFSVFSSFMVMIGAGATYMFGNYSKVIKSEFNYSQTQLNTMGFAKDLGSNAGVFAGLFAEVAPPWLLFLVGSFLNFFSYFMIWLSVTNRISKPEFWQLCFCICMAANSQNFPNTAVLVSNVRNFPDRRGVILGLLKGFVGLGGAVMTQAYLAIYGHENPSNLILLLSWLPTMVSLVLMFSVRTIKEQKHPHELRIFYQFLYVAILLALFLMALTITQKQTTFTQSAYFGGAIVILCLLFLPLLIVIKEEFVVFKLGKAFGPTFSISIDQKPPSKVIPSKLPTTLEEITEEPPTCFSSIFNKPERGEDYTILQALISKDMAFLFMATLCGTGSTIATIDNLGQIGESLEYPPQAISIFVSLVSILNFFGRVFSGFMSETLVVKYKIPRPMMFSIFLLLTCIGQLLVAYPSPGSVYIASLLIGFAFGAQVPLLFAIISDLFGLKHYSTLFNCGQLAIPIGSYILNVDIIGRLYDMEAEKGGEMKTGKGLTCIGSHCFSGSFSVIAGVTLFGSVVSLLLAFRTREFYKGDIYKRFREDMWMPESDVEFYCLNEKKNNGR 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43477481 43479211 - evm.model.ptg000005l.320 HCH3g1197 541925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1197 576 SUPERFAMILY MFS general substrate transporter 19 542 IPR036259 -
HCH3g1197 576 Gene3D MFS general substrate transporter like domains 338 545 IPR036259 -
HCH3g1197 576 Gene3D MFS general substrate transporter like domains 17 214 IPR036259 -
HCH3g1197 576 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 18 553 - GO:0016020(PANTHER)
HCH3g1197 576 CDD MFS_Mch1p_like 19 529 - -
HCH3g1197 576 Pfam Nodulin-like 20 266 IPR010658 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1197 HCH-Chr3:43477481 HCH3g1199 HCH-Chr3:43589131 1.10E-177 dispersed
HCH3g1196 HCH-Chr3:43434042 HCH3g1197 HCH-Chr3:43477481 8.10E-173 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1197 - - - 0.0