Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1199 ATGAATGCGGCAACAACGAGAAGCGTCGCCTCCGGTAAAGGCGGTAGGAGTTGTGTGCCGTTTCGATTTGCAGCGCAAGTAATTCAAGGAAGATGGTTTACTGTTTTTGCCACTTTTTTGATCATGGCCGGAGCTGGTGCCACTTATCTGTTTGGCGTTTACTCGAAGCAGATAAAAGCTACCCTTGGTTACGACCAAACCACTCTGAATCTGATGGGTTTTTTCAAAGATCTTGGCGCTAACGTCGGTGTTCTTTCTGGTCTCATTGCCGAAGTAACGCCTACTTGGTTTGTTCTTCTTCTTGGCTCTCTGATGAATTTCGCTGGCTATTTCATGATTTGGCTCGCTGTCACTGGCAGAATCTCTAAGCCAAAAGTCTGGCATATGTGTTTTTACATTTGCATCGGAGCGAATTCTCAGAATTTCGCAAACACCGGCGCTTTGGTTACTTGTATCCAGAATTTCCCCGAAAGCCGTGGGGCGATGATGGGTCTTTTGAAAGGCTTCACGGGACTAAGTGGAGCGATGCTGACTCAAATGTATTTGGCCATTTATGGAAACGATGCTACATCTCTCATTCTACTCATTGCATGGCTTCCGGCGGCTCTCTCTGTAATTTTCATTTATACGATTCGGACTCTTAAATCGGAGAGGAAGCCGAACGAGATGAGAGTTTTTTACCAATTCCTTTATGTTTCAATGGGGCTTGCTGTTTTTCTCATGATTATGAATATAGTTCAAAAGAAAGTTAATTTTACTCAAGCAGCTTATGCCGGGAGTGTTACTGTAATTTGCGTCTTTCTTTTTATGCCACTCGTAATTGCCATTAGAGAAGAACTGATTCTCTGGAGTCAAAAGACAAATCATCCCATGGCCATTGAAGACCCACAACCAATCAAATCTAAAGAATTGGAGGAGTCAGTGCCAGAGCCAGAGCCAAAGCCAGAGCCAGAGCAAGAGATATCCTGTTTTTCCAACATATGCAATAAACCAGAAAGAGGAGAAGATTACACCATTTTACAAGCACTTCTCAGCATTGACATGTTGGTTTTGTTTGTTGCAACATTCTGTGGGCTCGGATCAAGCTTGACAGCAATCGACAATCTTGGCCAAATCGGGGAATCACTAGGATATCGACCACAGACTATAAACTCCTTCGTCTCACTCGTTAGCATATGGAATTACTTCGGCCGTGTTTTCTCCGGATTCGGATCCGAAATCCTTCTCTCAAAATTCAAATTCCCAAGACCCCTGATGATGACTTTAGTCCTTCTCCTCTCCTGCGTAGGCCAAATCCTCATCGCCTTCCCCTTTCCCGGTTCCATCTACGTCGCATCAGTCATCATCGGCTTTTCCTTCGGAGCCCAACTTCCACTGCTTTTTGCCATAATTTCTGAGGTTTTCGGCCTCAAGTATTTCTCGACGCTGTTTAATTGCGCGCAAATAGCAAGCCCACTGGGTTCATACATTCTCAATGTTCAAGTTACTGGAATGTTATATGATAGAGAAGCTATAAAGGAACTGCGAAAGAAAGGGCTTCAAAGAACATCAGTCAAGGAATTGATTTGTATTGGAAAACAGTGTTACAGGCTATCTTTTATAATTTTAACAGGGGTTACTCTTTTTGGTGCTCTTGTTTCTTTGATTTTGGTAATGAGAACCAGGAAGTTTTATGAAGGTGATATTTACAAGAAGTTCAGGCTCGACGTCAAGAAGACGAATGAACAACATCCTTCTGATTCTACTGTCGAATCAAAGTGA 1761 43.1 MNAATTRSVASGKGGRSCVPFRFAAQVIQGRWFTVFATFLIMAGAGATYLFGVYSKQIKATLGYDQTTLNLMGFFKDLGANVGVLSGLIAEVTPTWFVLLLGSLMNFAGYFMIWLAVTGRISKPKVWHMCFYICIGANSQNFANTGALVTCIQNFPESRGAMMGLLKGFTGLSGAMLTQMYLAIYGNDATSLILLIAWLPAALSVIFIYTIRTLKSERKPNEMRVFYQFLYVSMGLAVFLMIMNIVQKKVNFTQAAYAGSVTVICVFLFMPLVIAIREELILWSQKTNHPMAIEDPQPIKSKELEESVPEPEPKPEPEQEISCFSNICNKPERGEDYTILQALLSIDMLVLFVATFCGLGSSLTAIDNLGQIGESLGYRPQTINSFVSLVSIWNYFGRVFSGFGSEILLSKFKFPRPLMMTLVLLLSCVGQILIAFPFPGSIYVASVIIGFSFGAQLPLLFAIISEVFGLKYFSTLFNCAQIASPLGSYILNVQVTGMLYDREAIKELRKKGLQRTSVKELICIGKQCYRLSFIILTGVTLFGALVSLILVMRTRKFYEGDIYKKFRLDVKKTNEQHPSDSTVESK 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43589131 43590891 - evm.model.ptg000005l.318 HCH3g1199 541927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1199 586 FunFam Nodulin family protein 339 560 - -
HCH3g1199 586 Pfam Nodulin-like 31 276 IPR010658 -
HCH3g1199 586 Pfam Major Facilitator Superfamily 351 556 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
HCH3g1199 586 Gene3D MFS general substrate transporter like domains 343 558 IPR036259 -
HCH3g1199 586 Gene3D MFS general substrate transporter like domains 26 222 IPR036259 -
HCH3g1199 586 SUPERFAMILY MFS general substrate transporter 31 556 IPR036259 -
HCH3g1199 586 CDD MFS_Mch1p_like 30 544 - -
HCH3g1199 586 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 30 567 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1197 HCH-Chr3:43477481 HCH3g1199 HCH-Chr3:43589131 1.10E-177 dispersed
HCH3g1199 HCH-Chr3:43589131 HCH7g0823 HCH-Chr7:16794824 5.30E-177 dispersed
HCH3g1199 HCH-Chr3:43589131 HCH3g1200 HCH-Chr3:43674213 3.70E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1199 - - - 0.0