Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1200 ATGGATGCAGCGACAACGAGTACCGTCGCCGCCCATAACGGCGGCAACCGTGGTGGGCCACTTCAATTTGCAATGCATGTTATTAGAGGCAGATGGTTCACTGTGTTTGCCACCTTTCTAATCATGGCCGGAGCTGGTGCAACTTATCTATTTGGTGTTTATTCGAAACAGATAAAAGCTACACTTGGATACGATCAAACAACCTTGAATTTGTTGGGTTTTTTCAAAGATCTTGGGGCTAATGTTGGTGTTCTTTCTGGACTCATTGCCGAGGTCTCGCCCACTTGGTTTGTCCTTCTTCTTGGCTCTACGATGAATTTTGTTGGCTATTTCATGATCTGGCTCGCTGTGACTGGAAAAATCGCAAAACCGAAAATCTGGCATATGTGTTTTTACATTTGCATCGGAGCAAATTCTCAGAATTTTGCAAACACTGGTGCTTTAGTTACTTGTATCCAGAATTTCCCGGAAAGTCGTGGGGCGATGATGGGTCTTTTGAAAGGATTTACGGGACTAAGTGGAGCAATGATGACACAAATGTACTTGGCTATCTATGGAAATGATGCTACGTCTCTCATTCTCCTAATTGCGTGGCTTCCAGCAGCACTCTCCGTCGTTTTCGTTTACACGATTCGGACTTTGAAGGTGGAGAGGCAGCCTAACGAGAAGAGAGTTTTTTATCAGTTCCTTTATATTTCAATGGGACTTGCCGTTTTCCTCATGATTATGAATATACTCCAGAAGAAGTTGGTTTTCACCAAGGCAGCCTATGCTGGAAGTGTCACTGTAATTTGTGTCTTTCTTTTTATGCCACTCCTTATTGTTATCAGAGAAGAGCTTCTTCTTTGGAATCAAAAGACCAATCAGCCCAATGAAGACCCACAACCACTTGAATATAAAAATGTTGAATCCACACAAAATCATTCAGAAAAGAAGAAGAAGACAATGACTCCTTGTTTATCAAGCATGTTAGATAAACCAGAAAGGGGTGAAGATTACACGATTTTACAAGCACTTCTCAGCATCGACATGTTGGTTTTGTTTGTTGCAACCTTCTGTGGTCTTGGATCCAGCTTAACAGCCATGGATAATTTAGGCCAAATCGGTGAGTCACTCGGCTATGAACCGCACACTGTCAACTCCTTCGTTTCCCTAGTTAGCATATGGAATTACTTCGGCCGTGTCTTTTCCGGGTTCGTATCAGAAATTCTTCTCACAAAATGGAAATTCCCTAGACCCCTAATGATGACTTTGGTCCTCCTCCTCGCAAGCCTCGGCCATTTCATTATCGCGTTCCCGTTTCCTGGTTCTGTCTACGTAGCATCGGTGATCATGGGCTTTTCTTTTGGGGCGCAACTTCCATTACTTTTCGCCATAATTTCTGAGCTATTCGGTCTCAAGTATTTCTCAACATTGTTCAATTGTGGGCAAATAGCAAGTCCACTGGGTTCATACATTCTCAATGTGAAGGTTACTGGAATGTTATATGATAGAGAAGCTATAAAGGAACTGGAGAAGAGAGGGCTTCAAAGAACATCAGTTAAGGAATTGATTTGTATAGGAAAACAGTGTTACAGGCAACCGTTTATAATTTTAACAGCGGTTACTTTTTTCGGTGCTCTTGCTTCTTTGATTCTGGTAATGAGAACAAGGAAGTTTTATAAAGGTGATATTTACAAGAAGTTCAGGGTGGAGGTGAAGAAAGACAATGAGAAAGAGATCCCTTCTCCGTCTTCTTCTTCTACTACCGAATCAAAGTGA 1761 42.02 MDAATTSTVAAHNGGNRGGPLQFAMHVIRGRWFTVFATFLIMAGAGATYLFGVYSKQIKATLGYDQTTLNLLGFFKDLGANVGVLSGLIAEVSPTWFVLLLGSTMNFVGYFMIWLAVTGKIAKPKIWHMCFYICIGANSQNFANTGALVTCIQNFPESRGAMMGLLKGFTGLSGAMMTQMYLAIYGNDATSLILLIAWLPAALSVVFVYTIRTLKVERQPNEKRVFYQFLYISMGLAVFLMIMNILQKKLVFTKAAYAGSVTVICVFLFMPLLIVIREELLLWNQKTNQPNEDPQPLEYKNVESTQNHSEKKKKTMTPCLSSMLDKPERGEDYTILQALLSIDMLVLFVATFCGLGSSLTAMDNLGQIGESLGYEPHTVNSFVSLVSIWNYFGRVFSGFVSEILLTKWKFPRPLMMTLVLLLASLGHFIIAFPFPGSVYVASVIMGFSFGAQLPLLFAIISELFGLKYFSTLFNCGQIASPLGSYILNVKVTGMLYDREAIKELEKRGLQRTSVKELICIGKQCYRQPFIILTAVTFFGALASLILVMRTRKFYKGDIYKKFRVEVKKDNEKEIPSPSSSSTTESK 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 43674213 43675973 - evm.model.ptg000005l.317 HCH3g1200 541928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1200 586 FunFam Nodulin family protein 335 556 - -
HCH3g1200 586 SUPERFAMILY MFS general substrate transporter 29 553 IPR036259 -
HCH3g1200 586 Pfam Nodulin-like 31 276 IPR010658 -
HCH3g1200 586 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 29 563 - GO:0016020(PANTHER)
HCH3g1200 586 CDD MFS_Mch1p_like 30 540 - -
HCH3g1200 586 Gene3D MFS general substrate transporter like domains 340 580 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1194 HCH-Chr3:43095376 HCH3g1200 HCH-Chr3:43674213 1.40E-185 dispersed
HCH3g1196 HCH-Chr3:43434042 HCH3g1200 HCH-Chr3:43674213 3.30E-182 dispersed
HCH3g1200 HCH-Chr3:43674213 HCH7g0823 HCH-Chr7:16794824 2.30E-172 dispersed
HCH3g1199 HCH-Chr3:43589131 HCH3g1200 HCH-Chr3:43674213 3.70E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1200 - - - 0.0