Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1211 ATGGAGAAATCTGGGTATGGTCGTGATGGAATTTTCAGATCCTTACGACCACGAATTCTGTTTCCCAAAGATCCCAATCTCTCAATGATCTCCTTCCTCTTTCAAAACTCATCTTCTTATCCAAACAGACCTGCTATCATTGACACAGAATCCTCTGAAACTCTCTCTTACTCCCAGCTTGAATCCTTATCAATCAAATTCTCCAACGCCTTACTCCAATTGGGTATCAAGAAAAACGACGTGGTTTTGATTTTTGCTCCAAATTCAGTCAAGTTTTCCATCTCTTTCATTGGAATTATTGCCATTGGTGCTATTGTCACCACTTGTAACCCTGTTTTCACTATCTCTGAGTTAACTAAGCAAGTTAAAGATGCTAAACCAAAACTTGTCATAACTGTTTCTGAATTATGGGACAAAGTCAAGAATCTTAATATCCCAACAGTGTTTCTGGGACATCGAGATTCGAGTTCGAGCATTTATTGTTTTGATGATTTGATTAACTTGGCTGCGGGTGAATCAAATTCAGAGTTTCCTTTGGTTGTTGTTAATCAAAAAGATACAGCTGCGCTTTTGTATTCATCAGGAACTACAGGGGCGAGTAAAGGTGTTATTTTGACTCATGGAAACTTCATAGCTTCTTCATTGATGATTACAGGAGATCAGTGGATGTGGGGACAGACACATTATGTATTTCTTAACTTTTTGCCTATGTTTCATGTGTTTGGTCTTGCTTGCATTACTTATGCGCAGCTACGGAAAGGAAATACGATTGTCTCAATGTCGAGATTCGACTTGGATAAGGCCTTGTGGGCTGTTGAGAAGTACAAGGTGACGGATTTGTGGGTTGTGCCGCCGGTTGTGCTTGCTTTGGCAAAGCAGAATGTTGTGAAGAAATACGATCTTTCGTCTTTGAAGCGTATCGGTTCTGGAGCTGCACCTTTGGGGAAGGAAGTAATGGAGGAATGTGCTAAAAATATTCCTAATTCAGTGGTTGTCCAGGGCTATGGTATGACTGAAACTTGTGGAATTATTTCTCTGGAGAATCCAGTAGTTGGCATACGTAGTTCGGGTTCAGCTGGAACGCTTGCTTCCGGTATTGAATGTAAAATAGTCAGCACAGATACTTTGAAGCCTCTTCCTCCTAATCAATATGGAGAGATATGGGTTCGGGGACCTAATATGATGCAAGGTTATTTCAACAATCCACAGGCTACCAAGCAAACTATTGATAAATATGGCTGGGTGCATACGGGTGATCTCGGATATTTTGATGAGAACGGACAACTTTACATTGTTGATCGAATTAAGGAACTCATCAAGTACAAAGGTTTCCAGGTTGCCCCAGCTGAGCTTGAAGCGCTATTGGTGTCTCACCCGGATATATTGGATGCCGTTGTCATCCCATATCCTGATGCTGAAGCTGGAGAAGTTCCACTTGCATATGTTGTTCGATCTGCCAATAGTTGTTTGACTGAAGACGACATCATCAAATTCATTTCCGATCAGGTTTCTCCTTACAAAAGGTTAAGAAAAGTGGCATTCATCAACAGTGTCCCCAAGTCTGTTTCTGGGAAAATCCTGAGGAGAGAACTCATTGAGAAAGTAAGATCCAAAATTTGA 1620 40.99 MEKSGYGRDGIFRSLRPRILFPKDPNLSMISFLFQNSSSYPNRPAIIDTESSETLSYSQLESLSIKFSNALLQLGIKKNDVVLIFAPNSVKFSISFIGIIAIGAIVTTCNPVFTISELTKQVKDAKPKLVITVSELWDKVKNLNIPTVFLGHRDSSSSIYCFDDLINLAAGESNSEFPLVVVNQKDTAALLYSSGTTGASKGVILTHGNFIASSLMITGDQWMWGQTHYVFLNFLPMFHVFGLACITYAQLRKGNTIVSMSRFDLDKALWAVEKYKVTDLWVVPPVVLALAKQNVVKKYDLSSLKRIGSGAAPLGKEVMEECAKNIPNSVVVQGYGMTETCGIISLENPVVGIRSSGSAGTLASGIECKIVSTDTLKPLPPNQYGEIWVRGPNMMQGYFNNPQATKQTIDKYGWVHTGDLGYFDENGQLYIVDRIKELIKYKGFQVAPAELEALLVSHPDILDAVVIPYPDAEAGEVPLAYVVRSANSCLTEDDIIKFISDQVSPYKRLRKVAFINSVPKSVSGKILRRELIEKVRSKI 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44340792 44343708 + evm.model.ptg000005l.306 HCH3g1211 541939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1211 539 Pfam AMP-binding enzyme C-terminal domain 450 525 IPR025110 -
HCH3g1211 539 Pfam AMP-binding enzyme 35 399 IPR000873 -
HCH3g1211 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 531 - GO:0016405(PANTHER)
HCH3g1211 539 CDD 4CL 21 531 - -
HCH3g1211 539 ProSitePatterns Putative AMP-binding domain signature. 190 201 IPR020845 -
HCH3g1211 539 SUPERFAMILY Acetyl-CoA synthetase-like 19 537 - -
HCH3g1211 539 Gene3D - 9 436 IPR042099 -
HCH3g1211 539 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 436 - -
HCH3g1211 539 Gene3D - 437 538 IPR045851 -
HCH3g1211 539 FunFam 4-coumarate--CoA ligase 2 437 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0297 HCH-Chr11:2718502 HCH3g1211 HCH-Chr3:44340792 6.20E-188 dispersed
HCH3g0428 HCH-Chr3:2743457 HCH3g1211 HCH-Chr3:44340792 1.40E-110 dispersed
HCH3g1211 HCH-Chr3:44340792 HCH8g1024 HCH-Chr8:46243694 1.30E-113 dispersed
HCH3g1211 HCH-Chr3:44340792 HCH12g0078 HCH-Chr12:402955 9.40E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1211 K01904 - csv:101220141 866.3