Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1217 ATGGCAGACGCTGATGTCGAGGGAGCCCCAGGAAGCTCAATGCATGGAGTGACTGGAAGAGAGCAAACATTCGCGTTTTCAGTTGCTTCACCAATTGTACCAACTGATACAACTGCTAAATTTGCTTTACCAGTTGACTCTGAGCATAAGGCTAAGGTTTTCAAGCTTTTCTCTTTTGCAAAACCCCATATGAGAACCTTTCATTTGTCTTGGATTTCCTTCTTTACTTGTTTCATTTCTACATTTGCTGCTGCCCCTCTTGTCCCCATTATTCGTGACAACCTTAATCTTGTCAAATCTGATATTGGCAATGCTGGAGTTGCTTCTGTCTCAGGCAGTATCTTCTCTCGTCTTGCTATGGGTGCTGTTTGTGACCTTTTGGGTCCTCGTTTTGGCTGTGCTTTCCTTATCATGCTTTCAGCTCCTACCGTCTTTTGTATGTCGTTTGTGTCGTCTGCCGGTGGTTATATTGCCGTTCGATTCATGATAGGGTTCTCTCTTGCGACTTTTGTTTCTTGTCAGTTTTGGATGAGTACTATGTTTAATAGTCAGATTATTGGTCTTGTTAATGGAACTGCTGCTGGTTGGGGGAATATGGGTGGAGGAGCAACTCAGCTTTTGATGCCTTTGCTTTTTGATATTATAAAAAAAACTGGCTCTACTCCTTTTACTGCATGGAGAATTGCTTTCTTTATCCCTGGTTGGCTTCATATTATAATGGGTATTTTAGTATTAACTCTTGGTCAGGATTTACCTGATGGGAATCTGAGTAGCCTTCAGAAGAAGGGTAATGTTGCCAAAGATAAGTTCTCTAGTATATTGTGGTATGCAATTACAAATTATAGAACTTGGATCTTCGTCCTCCTCTATGGCTACTCAATGGGTGTTGAACTTTCCACTGATAATGTTATTGCTGAATATTTCTACGATAGGTTTGATCTAAAGCTACACACAGCCGGAATCATCGCAGCAACCTTTGGGATGGCAAATATAGTGGCTCGACCCTTTGGAGGTTACGCTTCAGACGTGGCTGCTCGTCATTTCGGGATGAGAGGAAGATTATGGACGCTTTGGATCCTCCAAACAGCAGGTGGAGCTTTCTGCATATGGCTTGGGAAAGCTGAAAAGCTTCCGGTAGCCATAGTTACAATGATATTATTCTCAATAGGAGCTCAGGCTGCATGTGGAGCTACTTTTGGAATAATTCCATTCATTTCTCGAAGATCATTAGGAATAATATCAGGAATGAGTGGGGCAGGAGGGAATTTTGGATCTGGTTTAACACAATTAGTATTCTTTACAAGTCCAAAAATGACTACTGACAGAGGCCTGTTTCTAATGGGAATAATGATTGTTTGTTGCACTCTTCCAGTGGCTTTGGTTCATTTCCCACAATGGGGGAGTATGTTTTTACCACCCACTAAAAATGTAGAGAAATCAACCGAAGAATTTTATTATGGATCTGAATGGACTGAAGATGAGAAGAAGAAGGGTCTTCACCATCAGAGTATTAAGTTTGCTGAGAACAGCAGATCTGAACGTGGAAGGCGTGTCGCCTCTGCTCCAACCCCACCAAATACCACTCCTTCCCATGTTTGA 1599 42.03 MADADVEGAPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSFAKPHMRTFHLSWISFFTCFISTFAAAPLVPIIRDNLNLVKSDIGNAGVASVSGSIFSRLAMGAVCDLLGPRFGCAFLIMLSAPTVFCMSFVSSAGGYIAVRFMIGFSLATFVSCQFWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLLMPLLFDIIKKTGSTPFTAWRIAFFIPGWLHIIMGILVLTLGQDLPDGNLSSLQKKGNVAKDKFSSILWYAITNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLHTAGIIAATFGMANIVARPFGGYASDVAARHFGMRGRLWTLWILQTAGGAFCIWLGKAEKLPVAIVTMILFSIGAQAACGATFGIIPFISRRSLGIISGMSGAGGNFGSGLTQLVFFTSPKMTTDRGLFLMGIMIVCCTLPVALVHFPQWGSMFLPPTKNVEKSTEEFYYGSEWTEDEKKKGLHHQSIKFAENSRSERGRRVASAPTPPNTTPSHV 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 44977227 44979015 + evm.model.ptg000005l.300 HCH3g1217 541945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1217 532 MobiDBLite consensus disorder prediction 493 515 - -
HCH3g1217 532 FunFam High affinity nitrate transporter 59 256 - -
HCH3g1217 532 FunFam Nitrate transporter 2.1 267 468 - -
HCH3g1217 532 CDD MFS_NRT2_like 67 460 IPR044772 GO:0015112(InterPro)
HCH3g1217 532 Gene3D MFS general substrate transporter like domains 58 256 IPR036259 -
HCH3g1217 532 Gene3D MFS general substrate transporter like domains 266 467 IPR036259 -
HCH3g1217 532 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 12 517 IPR044772 GO:0005886(PANTHER)|GO:0015112(InterPro)|GO:0015112(PANTHER)|GO:0015706(PANTHER)|GO:0071249(PANTHER)
HCH3g1217 532 SUPERFAMILY MFS general substrate transporter 57 464 IPR036259 -
HCH3g1217 532 MobiDBLite consensus disorder prediction 493 532 - -
HCH3g1217 532 Pfam Major Facilitator Superfamily 71 427 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1052 HCH-Chr1:58362827 HCH3g1217 HCH-Chr3:44977227 2.00E-172 dispersed
HCH3g1217 HCH-Chr3:44977227 HCH4g0040 HCH-Chr4:247930 6.50E-174 dispersed
HCH3g1217 HCH-Chr3:44977227 HCH3g1219 HCH-Chr3:45054112 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1217 K02575 - csv:101218244 980.704