Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1226 ATGGATAATAGTTATCATGGGTTTGAACATGTTGCACAACAAAGCAGGCGTGATAAGCTAAGAGTTCCTCAACAAAGCAGTCTTGTTCGATTTAGAAGTGTTAAGAATGCGATTTTGCCTCCTGAGTCATCTTTGTTACCCTCAGAAATGATCCATTTTTCAGACGAAAGGGACGTAATGTTGCGTCAGCAATTTGTGACGGTCGAGGATGCTTCATTTGCTTCCTCATCTAACCCATTGTCTTCTTTTTCCAATTCTTTGTTGAAAGCCTCAGGTGGGATTGTAAACGGTGGTTATTGGAAAAGCTCTGATTGGTTGGTCAGCTGTGGAAATAATTCTGTGGGTGATGATGATATCACTCCTAGCTCTATGTTAACTGATTCTACTGCATATTCACTTGGTTTTCAAACTTCTAACTCTATAAACAATCAACATAGTCAAAAGCATATAGGAGAATTATTGCATTTGCCTTCTCCACTTTACCAAAATACTCTTCCTGATGTTGTTACTTCAGCTTCTATTGTGCAGCATAACTTCAGAGATATTAATCCAACTGCATGTGAAGGCAGTGAAAATGAACTTGCACTTCTTCCCGTCTATAGAAATCAGTCAAATGTGTTGCCTTTTGATAATACTGGTTCTTGGACAGATAGAACTTGTGATAATAATTGCCGCAGCTGGGTTGGTGATGATTTGGGTTCTATTGCAAGAAAAAGTGATGAAGAATTCAGGACTTTTATGAATGATTCTTCTAATCAACAAGGTTTATCTCTATCGCTTTCTTCGAATCCACTGTCTAAATTGCCCATTACTCAGTTTGAAGAGTCGGAGGAATTACACGAAAGCGGCAACACTATGTTAAAAAATCCCCATGATTCCAGAACTGTCAAGTCTGAGAATCTGTGTAGATTACCAAAGCCATCTATTGCTAATAAAAATTGTGGGAAATCGCTTCAAGACATGATGGGGGTCCCTGTGAATGCATATCGAAACACAGGTCCTCTTGGCCCCTTCACCGGTTACGCAACCATTTTAAAGAGTTCTAAATTCTTGAAGCCAGCCCAACTATTGCTTGATGAATTTTGTGGCTCAGATGGTTCAAAGTTTGTCAGCAAACCATGTGAGGTGTTGGAAAAGACATATAAGGAAGCTTCCTCAGCATCATCTGATGCAGCAGCTCTTATTGCATTGAGAAATGAGGTTGGGATTAAGCGAAATAATTCGTGTGCAGAAACTTCTACGGTGTATGGTTCTAATGAAACAAGTGTTAGTGGAGTTGGGAGCATTTCTTCTGAATCTCATCAACCAGAGTATCAGCAAAAGAAAGCAAAATTGCTGTGTATGTTAGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCCTCCTTTGAATCGGTAGCTGGTCTTAGTTCTGCCACACCCTACATTTCCATGGCACTTAAGACAGTCACAAGGCATTTTCGGTGTCTGAAAAACGTCATATCGGAACAACTTAAATATCTAAAGAAGGTACTTGGTGAGGATTTGTCATCCCCAACTGCTGGAACAAGCAGCAGCAGCAAAGGTGATACAGATTCAGCTAGTTTTAAATACATGGAACAGAGCTACCAAAAGCAAAAAACTGGGATTGTTAATATGGGATTCCTCGAATCCCAACATGTTTGGAGGCCACAGAGAGGCTTACCAGAACGTGCAGTGGCGATTCTTAGAGCCTGGCTCTTTGAACATTTTCTTCATCCGTACCCCACAGACTCAGATAAGCACATGTTATCTTCTCAAACAGGCCTTTCTCGAAACCAGGTATCAAATTGGTTCATAAATGCTAGAGTGCGAGTCTGGAAGCCCATGGTTGAAGAGATACACACCCTAGAAACCAAGGGCATGGCAGAAATAAACAAAATCCATGGTGCGAATGATGGAAGTTTGACAATAGAAAACACTGGTTGGACTAGTAGCGACCAGCGTCTAAAAAACCAAGGCGTAAATGAAGTTAATGATCAGCATTTGCAGTGGAATCATGAGAAACAATCCAAATTGGAAGGTGGTGGTGTTCAGTCTACTAACATGGAGGGGGAATTGATAGGTTTCATGCCATACCAGCCACAGCCACAGCCACAGCCGAGCGGGGTTGAAGTCGGAGGCCTCGGTGCCGTTTCTCTTACATTGGGCCTTCGGCATCGTGTAGAGAGTGCACACCAGCAGCAACATCAATTGCAGCAACAAAATGATCAACTAATGCGGCAATATGGAAGCCAAATGATTCATGATTTTGTGGGGTAA 2301 41.42 MDNSYHGFEHVAQQSRRDKLRVPQQSSLVRFRSVKNAILPPESSLLPSEMIHFSDERDVMLRQQFVTVEDASFASSSNPLSSFSNSLLKASGGIVNGGYWKSSDWLVSCGNNSVGDDDITPSSMLTDSTAYSLGFQTSNSINNQHSQKHIGELLHLPSPLYQNTLPDVVTSASIVQHNFRDINPTACEGSENELALLPVYRNQSNVLPFDNTGSWTDRTCDNNCRSWVGDDLGSIARKSDEEFRTFMNDSSNQQGLSLSLSSNPLSKLPITQFEESEELHESGNTMLKNPHDSRTVKSENLCRLPKPSIANKNCGKSLQDMMGVPVNAYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSDGSKFVSKPCEVLEKTYKEASSASSDAAALIALRNEVGIKRNNSCAETSTVYGSNETSVSGVGSISSESHQPEYQQKKAKLLCMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISMALKTVTRHFRCLKNVISEQLKYLKKVLGEDLSSPTAGTSSSSKGDTDSASFKYMEQSYQKQKTGIVNMGFLESQHVWRPQRGLPERAVAILRAWLFEHFLHPYPTDSDKHMLSSQTGLSRNQVSNWFINARVRVWKPMVEEIHTLETKGMAEINKIHGANDGSLTIENTGWTSSDQRLKNQGVNEVNDQHLQWNHEKQSKLEGGGVQSTNMEGELIGFMPYQPQPQPQPSGVEVGGLGAVSLTLGLRHRVESAHQQQHQLQQQNDQLMRQYGSQMIHDFVG 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 45566935 45570686 + evm.model.ptg000005l.291 HCH3g1226 541954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1226 766 Coils Coil 735 755 - -
HCH3g1226 766 SMART prehox3 339 503 IPR006563 -
HCH3g1226 766 SMART HOX_1 562 626 IPR001356 GO:0003677(InterPro)
HCH3g1226 766 Gene3D - 565 627 - -
HCH3g1226 766 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 263 666 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH3g1226 766 ProSiteProfiles 'Homeobox' domain profile. 559 622 IPR001356 GO:0003677(InterPro)
HCH3g1226 766 FunFam BEL1-like homeodomain protein 9 565 627 - -
HCH3g1226 766 Pfam Associated with HOX 344 502 IPR006563 -
HCH3g1226 766 CDD homeodomain 562 623 IPR001356 GO:0003677(InterPro)
HCH3g1226 766 SUPERFAMILY Homeodomain-like 564 628 IPR009057 -
HCH3g1226 766 Pfam Homeobox KN domain 579 618 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0143 HCH-Chr11:1550738 HCH3g1226 HCH-Chr3:45566935 6.40E-52 dispersed
HCH3g1226 HCH-Chr3:45566935 HCH5g0533 HCH-Chr5:3672278 1.10E-52 dispersed
HCH3g1226 HCH-Chr3:45566935 HCH9g0718 HCH-Chr9:4783199 1.00E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33369 PF07526 POX 7.20E-41 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1226 - - - 0.0