Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1240 ATGGCTATGGCTATGGCCCACCACAGGGAGAGTGGAAATGGGTCTATCAATGGCCACCTTGATAGTACTGGAAAATATGTTCGTTACACGACTGAGCAAGTTGAAGCTCTTGAGAGAGTTTATGCAGAATGTCCAAAACCAAGCTCTTTGCGAAGGCAGCAATTGGTACGAGAATGCCCTATTCTTTCTAACATTGAGCCTAAGCAGATCAAAGTCTGGTTTCAGAATCGTAGGTGTAGAGAGAAGCAGAGAAAAGAGGCTTCTCGTTTACAGTCGTTAAACAGTAAATTGACGGCCATGAACAAGCTGTTGATGGAGGAAAATGATCGTTTGCAGAAACAAGTATCACAGCTTGTCTCTGAAAATGGATGTATGCGACAACATTTGCAAACAACTAATGCACCAGTAACAACTACTGATGCAAATTGTGATTCTGTGGCTACCACTCCTCAGCATTCACTTAGAGATACTAGTAGCCCTGCTGGACTCCTGTCTTTTGCAGAGGAGATTTTGGCAGCCTTCCTATCCAAGGCTACAGGAACTGCTGTTGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGAATCTTTACTATTTCACAAAGTTGCAGTGGCGTGGCTGCTCGAGCCTGTGGTCTTGTCAGTTTAGAGCCCATGAAGATTGCAGAGGTCCTAAAAGATCGTCCATCTTGGTTCCGAGATTGCCGGAGTCTTGAAGTATTTACAACAATTCCCACTGGTAATGGAGGGACAATTGAACTTGTTTATACACAGGTTTATGCTTCTACTACATTAGCTGCTGCACGTGATTTTTGGACTCTTAGATACACTACAACCTTGGAAAATGGCAGTCTTGTGGTTTGCGAAAGATCTCTTTCTGGCTCCGGTACTGGCCCGAATACAGCAGCTGCTGCTCAGTTTGTAAGAGCTGAAGTGCTTCCCAGTGGCTATCTGATTCGTCCATGTGAGGGTGGAGGGTCAATCATCCACATTGTAGATCACCTAAATCTTGAGGCTTGGAGGGTACCGGAGGTTGTAAGACCACTATATGAATCGTCAAAGGTGGTAGCCCAGAAAATAACTATAGCAGCTCTCCGCTACGTTAGACAAATAGCTCAAGAGACAAGTGGTGAAGTCACATACGGTTTAGGAAGGCAACCGGCAGTTCTTCGCACTTTTAGTCAAAGATTGAGCAGAGGATTTAATGATGCTGTCAATGGATTTAATGATGATGGCTGGTCTTTGATTAATTGTGATGGAGCTGAAGATGTGACCCTTGCTATAAATTCAAACAAGAAATTGAATACAACTTATAATCCGGTCAATTCTCTGGCATTCCCTGGGTTGGTTCTTTGCGCAAAGGCTTCCATGCTACTCCAAAACGTTCCTCCCGCTGCTCTGATTCGCTTCTTGAGGGAGCATCGCTCTGAGTGGGCTGATTTCAATGTTGATGCTTATTCCGCTGCGTCACTGAAAGCTAATTCATATGCATATCCAGGCATGAGATCGACAAGGTTTACAGGTAGCCAAATCATCATGCCGCTTGGCCATACAATTGAACAAGAAGAGTTGCTTGAAGTTGTAAGGCTCGAAAGCCACCCTCTCGCTCAAGAAGATGTTTTTTTGTCACATGACATTCATCTCTTGCAGATGTGTACTGGTATTGATGAGAATGCTATCGGGGCCTGTTCAGAACTTGTTTTTGCTCCAATTGATGAAATGTTTCCTGATGATGCTGTGCTGCTGCCTTCTGGTTTCAGGATCATCCCACTGGATTCTAAAACAAATGACACAAAAGATGCATGGAATTCAAATAGAACTTTGGATCTAACTTCCAGTCTTGAAGTTGGCTCATCTATTTCCCAAGAGGCATCAGCATATCATAATTCTAGATCAGTTTTAACCATAGCCTTCCAGTTCCCGTTTGATAACAACCTCCAGGATAACGTTGCGGCCATGGCAAGACAGTATGTTCGAAGTGTCATATCGGCTGTCCAGAGGGTTGCGGTTGCCATATCTCCCTCTGGATCAAACCCACCACAGGAACCAAAACGCTCATCTTCTTGTCCAGAAGCTCTTACACTGGCACAATGGATCTCTCATAGCTACAGATTCCATACGGGAACAGAATTGCTGCAAACGGACTCTTCAGATGGCGACTCAGTGTTGAAACATCTGTGGAATCATCAGGATGCAATTTTGTGCTGTTCATTAAAGTCATTGCCAGTATTCACGTTTGCAAACCAAGCAGGCCTTGACATGTTAGAGACGACTCTAGTTGCTTTACAGGACATCACATTGGATAAAATATTAGATGAGGCTGGACGAAAGGCATTATGTGCTGATTTTTCTAAGTTAATGCAGCAGGGATCTGCTTACTTCCCCGCTGGAATCTGTGTGTCGACGATGGGACGCAACGCTTCCTACGAACAGGCTGTTGCATGGAAAGTCCTTGCAGCAGATGAGTCATCTGTTCACTGCCTAGCCTTTTCCTTTGTAAACTGGTCGTTTCTATGA 2529 44.6 MAMAMAHHRESGNGSINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVSENGCMRQHLQTTNAPVTTTDANCDSVATTPQHSLRDTSSPAGLLSFAEEILAAFLSKATGTAVDWVQMPGMKPGPDSVGIFTISQSCSGVAARACGLVSLEPMKIAEVLKDRPSWFRDCRSLEVFTTIPTGNGGTIELVYTQVYASTTLAAARDFWTLRYTTTLENGSLVVCERSLSGSGTGPNTAAAAQFVRAEVLPSGYLIRPCEGGGSIIHIVDHLNLEAWRVPEVVRPLYESSKVVAQKITIAALRYVRQIAQETSGEVTYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLINCDGAEDVTLAINSNKKLNTTYNPVNSLAFPGLVLCAKASMLLQNVPPAALIRFLREHRSEWADFNVDAYSAASLKANSYAYPGMRSTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDVFLSHDIHLLQMCTGIDENAIGACSELVFAPIDEMFPDDAVLLPSGFRIIPLDSKTNDTKDAWNSNRTLDLTSSLEVGSSISQEASAYHNSRSVLTIAFQFPFDNNLQDNVAAMARQYVRSVISAVQRVAVAISPSGSNPPQEPKRSSSCPEALTLAQWISHSYRFHTGTELLQTDSSDGDSVLKHLWNHQDAILCCSLKSLPVFTFANQAGLDMLETTLVALQDITLDKILDEAGRKALCADFSKLMQQGSAYFPAGICVSTMGRNASYEQAVAWKVLAADESSVHCLAFSFVNWSFL 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 46484562 46490865 - evm.model.ptg000005l.277 HCH3g1240 541968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1240 842 CDD START_ArGLABRA2_like 160 376 - -
HCH3g1240 842 CDD homeodomain 25 85 IPR001356 GO:0003677(InterPro)
HCH3g1240 842 CDD bZIP 77 116 - -
HCH3g1240 842 Gene3D - 198 380 IPR023393 -
HCH3g1240 842 Pfam MEKHLA domain 698 841 IPR013978 -
HCH3g1240 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 20 842 IPR044830 GO:0003700(InterPro)
HCH3g1240 842 SUPERFAMILY Bet v1-like 166 377 - -
HCH3g1240 842 SMART HOX_1 22 88 IPR001356 GO:0003677(InterPro)
HCH3g1240 842 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
HCH3g1240 842 SMART START_1 165 375 IPR002913 GO:0008289(InterPro)
HCH3g1240 842 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677(InterPro)
HCH3g1240 842 Gene3D - 19 91 - -
HCH3g1240 842 Pfam START domain 166 374 IPR002913 GO:0008289(InterPro)
HCH3g1240 842 SUPERFAMILY Homeodomain-like 23 87 IPR009057 -
HCH3g1240 842 Pfam Homeodomain 25 83 IPR001356 GO:0003677(InterPro)
HCH3g1240 842 Coils Coil 90 121 - -
HCH3g1240 842 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0857 HCH-Chr3:6704258 HCH3g1240 HCH-Chr3:46484562 0.00E+00 dispersed
HCH3g1240 HCH-Chr3:46484562 HCH4g1429 HCH-Chr4:10491100 1.80E-298 dispersed
HCH2g1180 HCH-Chr2:54309966 HCH3g1240 HCH-Chr3:46484562 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33370 PF01852 START 1.50E-46 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1240 K09338 - vvi:100243208 1386.32