Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1260 ATGATGATGTCTGAATTAAATGGTCTTTCTTCTTTCTCCACAATTAATAACACGATTGGTCAACAACCCAACGCCAACCCTAACCAAATTCCAATCAAGAAGAAGAGAAACTTACCAGGAACACCAGATCCAGAAGCAGAAGTCATAGCCATGTCTCCGAAATCTCTGATGGCGAAAAACCGATTCCTTTGTGAAATATGCAACAAGGGATTCCAGAGAGACCAGAACCTGCAACTCCACCGCCGTGGACACAACCTGCCATGGAAGCTGAAGCAAAGAACAAACAAGGAAGTGAGGAAGAAGGTTTACGTGTGCCCGGAAAAGAGTTGTGTCCACCACGACCCGGCGAGGGCGCTTGGTGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAGCATGGGGAGAAGAAATGGAAATGTGAGAAATGCTCCAAGAAATATGCAGTTCAGTCAGATTGGAAGGCCCATACAAAGATATGTGGGACTAAAGAATACAAATGTGACTGTGGGACAGTCTTCTCAAGGAAGGATAGCTTCATTACACACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAATTCAAGATTCAGCTCATCAGTTTCAAATGTCATCAATCCAAGCTACAAAACTGACCATTTCATAAATGACACGATTCAAAATAATCAACAAGGAGCCAGCAGAATTATGAGCCAATTTTCATCAGTTTTTCAATCAGATTTTGCTGCAGCCTCAGATAATTATAACTCAATGCCAAATAATATTCCTATCAATTCAGATACCTACAATGACCAAAAGCCAAGGCATCATCAGCTTCCATTGTGGCTTGAATCTCCAACAAATACCAATGCTTTTCTAGCTATGGCTTCAAACAACTTGCATGATCAATCTTTCCTTCATGAAAATCTTCCCTTCAATGTTTTTGGATCTTTCAGTCATGGGAATCTTTCCATCTCTCCATTTTCTCGGAAGCCAAACGGGGAGGAAGAAAACAAACCTAACCTGTTGGAACCAGTTACCACTTCCTTGTACTCGTCTCACATGTCGGCGACGGCGCTGTTACAGAAGGCAGCACAGATGGGATCGACCGCAACCGCCACCCCGGCAGCGTTGTTTAATAGCAATGCCACCGCCGCCGCCTTTGGGTTGAATCCCAGTACTCTCCTGAGCTCTGAGTCCTTCCTTGGTAGCCAGAAAATGTTCCGGAGGCCGGAGAATGAAGCGGATAACATGAACCAGCGAATGGACCACCGTACAGCGGTGGCAAGAGGGAAAGAAGAAGGAGGACAGAATTTGACAAGAGATTTTCTGGGAGTAGAAAATCATAATGCAAGCAATGGACAGTTTCTACAACATGGTCATCTTCTACAGCTCGCCGCAATGGGATCTAATTGCTTGGAGTTAAATCAATACAGTGAGAATCGTGGCTGCCATTAG 1434 44.14 MMMSELNGLSSFSTINNTIGQQPNANPNQIPIKKKRNLPGTPDPEAEVIAMSPKSLMAKNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKICGTKEYKCDCGTVFSRKDSFITHRAFCDALAEENSRFSSSVSNVINPSYKTDHFINDTIQNNQQGASRIMSQFSSVFQSDFAAASDNYNSMPNNIPINSDTYNDQKPRHHQLPLWLESPTNTNAFLAMASNNLHDQSFLHENLPFNVFGSFSHGNLSISPFSRKPNGEEENKPNLLEPVTTSLYSSHMSATALLQKAAQMGSTATATPAALFNSNATAAAFGLNPSTLLSSESFLGSQKMFRRPENEADNMNQRMDHRTAVARGKEEGGQNLTRDFLGVENHNASNGQFLQHGHLLQLAAMGSNCLELNQYSENRGCH 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47541140 47543843 - evm.model.ptg000005l.257 HCH3g1260 541988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1260 477 SMART c2h2final6 103 133 IPR013087 -
HCH3g1260 477 SMART c2h2final6 138 158 IPR013087 -
HCH3g1260 477 SMART c2h2final6 62 84 IPR013087 -
HCH3g1260 477 FunFam protein indeterminate-domain 12-like 41 109 - -
HCH3g1260 477 MobiDBLite consensus disorder prediction 14 44 - -
HCH3g1260 477 Gene3D Classic Zinc Finger 41 114 - -
HCH3g1260 477 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
HCH3g1260 477 SUPERFAMILY beta-beta-alpha zinc fingers 61 158 IPR036236 -
HCH3g1260 477 Gene3D Classic Zinc Finger 116 195 - -
HCH3g1260 477 FunFam protein indeterminate-domain 5, chloroplastic-like 116 195 - -
HCH3g1260 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
HCH3g1260 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 445 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH3g1260 477 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 164 202 - -
HCH3g1260 477 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 99 133 - -
HCH3g1260 477 Pfam Zinc finger, C2H2 type 62 84 IPR013087 -
HCH3g1260 477 MobiDBLite consensus disorder prediction 14 31 - -
HCH3g1260 477 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1260 HCH-Chr3:47541140 HCH6g0106 HCH-Chr6:1325702 2.20E-88 dispersed
HCH3g0011 HCH-Chr3:109603 HCH3g1260 HCH-Chr3:47541140 1.80E-60 transposed
HCH11g0273 HCH-Chr11:2485642 HCH3g1260 HCH-Chr3:47541140 2.20E-94 wgd
HCH3g1260 HCH-Chr3:47541140 HCH9g0599 HCH-Chr9:4017327 9.60E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33371 None None None None HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1260 K25870 - cit:102611525 421.009