Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1261 ATGGCCGCAGCAGGCAGTGGAAAATCGCTCGAACAAACGCCAACATGGGCTGTCGCCATCGTCTGTTTCTTTTTACTTCTAATTTCTATTTTCATTGAATACATCCTCCACCTTATAGGAAAGTGGCTGAAGAATAGACATAAACGAGCCTTATTTGAAGCCTTGGAAAAGATTAAACAAGAGCTTATGTTATTGGGATTCATATCCTTGCTTCTAACAGTGGGGCAAGGACCAATATCAGATATATGTATACCTAAAAAAGTAGCAGCAACATGGCATCCATGTACTAAGGAGAAAGAGATGAAGATGAACAAGGAGTTGGAGGGCTCCAATACTAACGGCAGGAGACTGCTCACCCTACCGGATAGCGGTGGAAGTTTTCGGCGAATCTTAGCGGCGGCCGGAGAAGACAAGTGTGCTGCAAAGGGTCAAGTAGCATTTGTTTCTGTATATGGAATTCATCAACTCCATATCTTCATCTTTGTGTTGGCTGTTTGTCATGTCTTGTACTGTGTACTAACTTATGCTTTGGCTAGAGCCAAGATGAGAAGTTGGAAAAGATGGGAAAAAGAGACAAAAACAGCAGAATACCAGTTCTCACATGATCCTGAGCGGTTCAGATTTGCAAGAGACACATCGTTTGGGAGAAGGCACTTGAGCTTCTGGACCAATAATCCTATCCTAATGTATACAGTTTGTTTCTTCAGACAATTTGTGAGATCGGTTCCAAAGGTTGATTACTTGACATTAAGACATGGGTTTATAATGGCACATTTAGCACCTCAAAGCCATCAGCAATTTGACTTTCAAAAATACATTAATCGCTCACTTGAAGAGGATTTCAAAGTTGTCGTGGGAATCAGTCCCCCAATCTGGTTCTTTGCTGTGCTATTTCTTCTCTCAAACACTCATGGTTGGAGAGCATATCTATGGCTGCCATTTATCCCACTAATCATACTTCTTCTGATAGGAACGAAGCTACAAGTGATAATAACGAAGATGGCGCTGAGAATACAAGAAAGAGGAGAGGTGGTGAAGGGGGTGCCGGTGGTGGAGCCTGGCGATGATCTCTTCTGGTTTAACCGCCCTCGTCTCATTCTTTACCTTATCAACTTCGTTCTCTTTCAGAATGCTTTTCAAGTTGCTTTCTTTGCTTGGACTTGGTATGAGTTCGGATTGAATTCTTGTTTCCATGAGCACGTGGAGGATGTGGTGATCAGAATATCAATGGGGGTCATTGTTCAGATCCTTTGCAGCTACGTTACTCTTCCTCTCTATGCATTGGTGACTCAGATGGGATCAACAATGAAACCAACCATATTCAACGAAAGAGTAGCTGCCGCCCTTCGCAACTGGTACCACACAGCTAGAAAGCAAATCAAACACAACCGCGGTTCAGTCACTCCAATGTCGAGCCGACCGGCCACGCCGAGCCACAACATGTCACCGGTTCACCTCCTCCGCCATTACAAGAGCGAAGTTGACAGTTTCCACACATCGCCAAGAAGGTCGCCTTTCGAAGTCGATCATTGGGATAACGAGTCTCCTTCCCCCTCTCACGCACACCATGGCGACGGTTCATCTTCATCGCAACCCCATGTCGAATTGAGTTCGATTGAAAAAGACCCGGTTGAACCGATCCCGGTTAATTTGAACCCGGTTCCTCAACTACGGGTACGTGCGCAGCATGAGATTGATATGGGCCCAAAAGACTTTTCCTTTGATAGAAGATCGAGTGTTTGA 1743 44.75 MAAAGSGKSLEQTPTWAVAIVCFFLLLISIFIEYILHLIGKWLKNRHKRALFEALEKIKQELMLLGFISLLLTVGQGPISDICIPKKVAATWHPCTKEKEMKMNKELEGSNTNGRRLLTLPDSGGSFRRILAAAGEDKCAAKGQVAFVSVYGIHQLHIFIFVLAVCHVLYCVLTYALARAKMRSWKRWEKETKTAEYQFSHDPERFRFARDTSFGRRHLSFWTNNPILMYTVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHQQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGWRAYLWLPFIPLIILLLIGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQVAFFAWTWYEFGLNSCFHEHVEDVVIRISMGVIVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAAALRNWYHTARKQIKHNRGSVTPMSSRPATPSHNMSPVHLLRHYKSEVDSFHTSPRRSPFEVDHWDNESPSPSHAHHGDGSSSSQPHVELSSIEKDPVEPIPVNLNPVPQLRVRAQHEIDMGPKDFSFDRRSSV 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 47585699 47592276 - evm.model.ptg000005l.256 HCH3g1261 541989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1261 580 PANTHER MLO-LIKE PROTEIN 1 4 494 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH3g1261 580 Pfam Mlo family 8 490 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
HCH3g1261 580 MobiDBLite consensus disorder prediction 498 519 - -
HCH3g1261 580 MobiDBLite consensus disorder prediction 520 536 - -
HCH3g1261 580 MobiDBLite consensus disorder prediction 462 479 - -
HCH3g1261 580 MobiDBLite consensus disorder prediction 498 553 - -
HCH3g1261 580 MobiDBLite consensus disorder prediction 462 482 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0949 HCH-Chr14:37004386 HCH3g1261 HCH-Chr3:47585699 9.60E-130 dispersed
HCH3g1261 HCH-Chr3:47585699 HCH4g0860 HCH-Chr4:5508344 1.60E-133 dispersed
HCH3g1261 HCH-Chr3:47585699 HCH3g1263 HCH-Chr3:47782049 1.80E-132 proximal
HCH13g1347 HCH-Chr13:41357086 HCH3g1261 HCH-Chr3:47585699 3.80E-81 transposed
HCH1g0661 HCH-Chr1:55522966 HCH3g1261 HCH-Chr3:47585699 3.90E-201 transposed
HCH2g1166 HCH-Chr2:54237510 HCH3g1261 HCH-Chr3:47585699 4.80E-250 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1261 K08472 - csv:101217225 962.985