Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1270 ATGGAGAGCAGTGAGGGAGCTCCAACGACGCCACTTTCTCAGCCTTGTGTGGTCGTTAGTCCATGCGCGGCTTGCAAGATTTTGAGGAGAAGATGCGCTGAGAAATGCGTATTAGCTCCTTATTTCCCTCCCACTGACCCTTTCAAATTCACCATTGCTCATCGTGTTTTTGGTGCTAGTAATATCATTAAATTGCTTCAGGATCTTCCTGAATCACAAAGGGCTGATGCAGTTAGTAGCATGGTATATGAAGCGGGCGCGAGGATTCGAGATCCGGTTTATGGGTGCGCAGGGGCCATTTGCCAACTCCAAAAACAGATAAATGAGCTGCAGGCAGAGTTAGCCAAGGCACAGGCTGAGCTTGTCAACATACATTGCCAGCAAGCCAACCTTGTGGCTCTGATTTGCAAGGAATTGGCTCAAAAACCACAGGCGCCACCATCGCCCTATCACCAATCACTCGGTATCAATTTCGACATAGCAAGTCCTCAGAGTTACCAAAGCTATTCATGTGTCTTTGAGGATTGCAATATGTTGGAGCCTCTTTGGACATGA 555 47.75 MESSEGAPTTPLSQPCVVVSPCAACKILRRRCAEKCVLAPYFPPTDPFKFTIAHRVFGASNIIKLLQDLPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQINELQAELAKAQAELVNIHCQQANLVALICKELAQKPQAPPSPYHQSLGINFDIASPQSYQSYSCVFEDCNMLEPLWT 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48096045 48097303 - evm.model.ptg000005l.247 HCH3g1270 541998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1270 184 Coils Coil 100 127 - -
HCH3g1270 184 ProSiteProfiles LOB domain profile. 20 121 IPR004883 -
HCH3g1270 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 144 - -
HCH3g1270 184 Pfam Lateral organ boundaries (LOB) domain 21 118 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1270 HCH-Chr3:48096045 HCH3g1473 HCH-Chr3:52775859 4.60E-34 dispersed
HCH3g1270 HCH-Chr3:48096045 HCH3g1271 HCH-Chr3:48172352 3.80E-73 tandem
HCH1g0528 HCH-Chr1:54215123 HCH3g1270 HCH-Chr3:48096045 3.10E-48 wgd
HCH2g1152 HCH-Chr2:54160016 HCH3g1270 HCH-Chr3:48096045 1.80E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33372 PF03195 LOB 8.70E-41 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1270 - - - 0.0