Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1271 ATGGAGAGCAGCGAGGCAACGACGTCAATATCTCAGGCTTGTGCTGTCATGAGTCCATGCGCGGCCTGCAAGATTTTGAGGAGAAGATGCGTAGAGAAATGCGTATTGGCTCCTTATTTCCCTCCCACCGACCCTTTGAAATTCACCATTGCTCATCGTGTTTTTGGTGCTAGTAATATCATCAAGTTGCTTCAGGATCTTCCAGAATCACAAAGGGCAGATGCAGTGAGTAGTATGGTATATGAAGCAAGTGCAAGAATAAGAGATCCAGTTTATGGATGTGCAGGCTCCATTTGCCAACTCCAAAGACAGATAAATGATTTACAGGCAGAGTTAGCCAAGGCACATGCAGAGCTTCTCAATATGCAATGCCAACAAACCAATCTCTTAGCTCTGATCTGCAAGGAATTCGCTCAAACGCCGCCGTCATCGTCATCGTCCCCGTCCCCGCCGGCCCATCACCAATTACTTGATACTGATTTCGACATTGATATCCCTCAGAGTCACCAAAACTATTCATGCTTCTTTGAAGATATCAATATGTGGGAGCCTCTTTGGACATAG 564 45.92 MESSEATTSISQACAVMSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKLLQDLPESQRADAVSSMVYEASARIRDPVYGCAGSICQLQRQINDLQAELAKAHAELLNMQCQQTNLLALICKEFAQTPPSSSSSPSPPAHHQLLDTDFDIDIPQSHQNYSCFFEDINMWEPLWT 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48172352 48173568 - evm.model.ptg000005l.246 HCH3g1271 541999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1271 187 Coils Coil 98 125 - -
HCH3g1271 187 ProSiteProfiles LOB domain profile. 18 119 IPR004883 -
HCH3g1271 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 17 143 - -
HCH3g1271 187 Pfam Lateral organ boundaries (LOB) domain 19 116 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0420 HCH-Chr13:2909082 HCH3g1271 HCH-Chr3:48172352 9.20E-49 dispersed
HCH1g0528 HCH-Chr1:54215123 HCH3g1271 HCH-Chr3:48172352 3.00E-51 dispersed
HCH2g1152 HCH-Chr2:54160016 HCH3g1271 HCH-Chr3:48172352 4.90E-58 dispersed
HCH3g1271 HCH-Chr3:48172352 HCH3g1473 HCH-Chr3:52775859 1.00E-36 dispersed
HCH3g1270 HCH-Chr3:48096045 HCH3g1271 HCH-Chr3:48172352 3.80E-73 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33373 PF03195 LOB 8.00E-41 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1271 - - - 0.0