Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1283 ATGGCTGACGTTACTCACAACAATACTGGTGATTTTCCTGTTGTTTCTACACATGGAGGTCAATATGTTCAATATAATATCTTTGGAAATCCTTTCGAGATCACGTCTAAATATCGCTCTCCGATCATGCCGATCGGTCGCGGTGCCTACGGCATCGTTTGCTCGGTTATGAATTCGGAGACTAATGAGATGGTTGCAGTGAAGAAGATAGCTAATGCATTTGATAATCATATGGATGCGAAGCGGACGCTTCGTGAGATTAAGCTTCTTCAGCATTTGGATCATGAAAATGTCATAGCCATAAGAGATGTAATTCCTCCACCTTTAAGGAGAGAATTTACTGATGTCTACATTTCCTTGGAATTAATGGATACTGATCTTCACCAAATAATCCGATCGAACCAAAGTTTATCCGAAGAGCATTGTCAGTATTTCCTTTATCAGATACTCCGAGGACTCAAATACATACATTCTGCAAATGTCATTCATCGAGACTTGAAACCGAGCAACTTGTTGCTTAATGCAAACTGTGATCTTAAAATCTGTGACTTCGGTCTCGCTCGTTCAACTGCGGAGAATGAAATTATGACAGAATATGTAGTTACAAGATGGTATAGGGCACCTGAATTACTATTGAACTCTGATTATACAGCTGCTATAGATATATGGTCTGTAGGTTGCATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGGGATCAAGTGCATCAGATTCGTTTATTGACCGAGCTTCTTGGCACACCAACCGAATCTGATCTCGGATTTATTCGAAATGAGGATTCAAAGAGATACCTTCGGCAGCTACCTCCACATCCTCGTCAGCCATTAACGACGGTTTTTCCTCATGTTCATCCCTTGGCAATGGACCTTGTGGATAAAATGTTGACATTTGATCCAACAAAGAGAATTACTGTTGAAGAAGCATTGGCACATCCATACCTAGAAAGATTGCACGACATAGCCGACGAGCCGGTTTGCCCCGAGCCATTCTCATTCGAGTTTGAGAACCAATACCTTGATGAAGAGCAAATGAAAGAGATGATTTACAGGGAAGCATTGGCACTCAATCCAGAATATGCATGA 1113 41.24 MADVTHNNTGDFPVVSTHGGQYVQYNIFGNPFEITSKYRSPIMPIGRGAYGIVCSVMNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLQHLDHENVIAIRDVIPPPLRREFTDVYISLELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARSTAENEIMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDQVHQIRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPHPRQPLTTVFPHVHPLAMDLVDKMLTFDPTKRITVEEALAHPYLERLHDIADEPVCPEPFSFEFENQYLDEEQMKEMIYREALALNPEYA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48738991 48741387 - evm.model.ptg000005l.234 HCH3g1283 542011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1283 370 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524(InterPro)
HCH3g1283 370 Gene3D Transferase(Phosphotransferase) domain 1 123 351 - -
HCH3g1283 370 Gene3D Phosphorylase Kinase; domain 1 22 361 - -
HCH3g1283 370 FunFam Mitogen-activated protein kinase 123 351 - -
HCH3g1283 370 FunFam Mitogen-activated protein kinase 24 133 - -
HCH3g1283 370 SUPERFAMILY Protein kinase-like (PK-like) 43 331 IPR011009 -
HCH3g1283 370 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1283 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g1283 370 SMART serkin_6 39 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1283 370 Pfam Protein kinase domain 44 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1283 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 32 362 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH3g1283 370 ProSiteProfiles Protein kinase domain profile. 39 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0385 HCH-Chr3:2491747 HCH3g1283 HCH-Chr3:48738991 9.20E-25 dispersed
HCH3g1283 HCH-Chr3:48738991 HCH5g0539 HCH-Chr5:3699647 4.70E-147 dispersed
HCH3g1283 HCH-Chr3:48738991 HCH4g0122 HCH-Chr4:668730 6.40E-168 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81427 PF00069 Pkinase 1.40E-74 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1283 K20536 - csv:101202796 703.36