Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1290 ATGGGTTGCTTTCGTTGCACCGGAAAATCGACCAAGAAATCTGATAATATCGACGATCGAATCGTTTTAGATAAGGTGAGAGTAAATTCAAATTTGAATTTAAAGAAGGATGCAGAAGTAAAGGTGGTTGTTTCTAAGGAGAATGATAGTCAATTGGCTTTAGATGTTAAAAAATTGAATTTGAAGGATGAGGTTTCAAACGAAGGGGAAACGAATAAGACTTTTACGTTTGATGATCTCGCGGCAGCTACCAGAAACTTTAGGGAAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGATACTTGGAGAAGATTAATGAGGTTGTAGCTATCAAGCAACTTGATCGTAATGGACTTCAAGGAATTCGGGAATTTGTTGTTGAGGTCTTAACTTTAAGCCTAGCTGATCACCCTAACCTTGTGAAACTCATTGGTTTTTGTGCTGAAGGGGATCAGAGACTATTGGTTTACGAATACATGCCTTTGGGATCACTGGAAAATCACTTACATGATCTTCGACCTGGGGCAAAAGTAATCGATTGGAATGCGAGAATGAAAATTGCAGCAGGTGCAGCAAGGGGTTTGGAGTATTTGCATGAAAAGATGAAGCCCCCAGTTATATATCGTGATCTGAAATGCTCAAACATTTTGCTTGGTGAAGGATTTCATCCCAAGCTATCTGATTTTGGATTGGCCAAAGTAGGTCCCAGTGGGGATAAAACCCATGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCACCAGATTATGCAATGACGGGCCAGCTAACATTCAAATCCGATATTTACAGCTTTGGTGTTGTTCTATTGGAACTAATCACTGGAAGGAAAGCAATTGATCATTTAAAACCTCATTCAGAGCAAAATCTTGTGGCATGGGCACGACCGATGTTCAGAGACCGTAAGAAGTTTTCACAGATGGTTGATCCCATGCTCCAAGGACAATATCCTGTGAGAGGATTATACCAAGCTCTAGCTATAGCTGCAATGTGTGTTCAGGAGCAGCCAAATATGCGGCCAGTTATAACCGATGTAGTTACGGCTTTAAATTACCTAGCTTCCCAGAATTATGATCCCCAAACTCAACAAATCCAAAGCTCCCAGAAGAGACCTTCTTCGCCTAGACTGAGGCGGCATGACGATAAGAGGGAAACTTCAGACACAGGGTCAGACAGAGAGTGA 1218 41.71 MGCFRCTGKSTKKSDNIDDRIVLDKVRVNSNLNLKKDAEVKVVVSKENDSQLALDVKKLNLKDEVSNEGETNKTFTFDDLAAATRNFREDCFLGEGGFGKVYKGYLEKINEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNARMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGFHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHLKPHSEQNLVAWARPMFRDRKKFSQMVDPMLQGQYPVRGLYQALAIAAMCVQEQPNMRPVITDVVTALNYLASQNYDPQTQQIQSSQKRPSSPRLRRHDDKRETSDTGSDRE 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 49108702 49111597 + evm.model.ptg000005l.227 HCH3g1290 542018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1290 405 PANTHER OS07G0668900 PROTEIN 48 385 - -
HCH3g1290 405 MobiDBLite consensus disorder prediction 369 405 - -
HCH3g1290 405 Pfam Protein kinase domain 92 358 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1290 405 SUPERFAMILY Protein kinase-like (PK-like) 73 385 IPR011009 -
HCH3g1290 405 FunFam Serine/threonine-protein kinase PBS1 164 379 - -
HCH3g1290 405 FunFam probable serine/threonine-protein kinase RLCKVII 59 163 - -
HCH3g1290 405 MobiDBLite consensus disorder prediction 385 405 - -
HCH3g1290 405 Gene3D Transferase(Phosphotransferase) domain 1 164 386 - -
HCH3g1290 405 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1290 405 PIRSF TyrPK_CSF1-R 2 91 - -
HCH3g1290 405 PIRSF TyrPK_CSF1-R 86 183 - -
HCH3g1290 405 PIRSF TyrPK_CSF1-R 178 405 - -
HCH3g1290 405 SMART serkin_6 87 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH3g1290 405 Gene3D Phosphorylase Kinase; domain 1 46 163 - -
HCH3g1290 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH3g1290 405 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524(InterPro)
HCH3g1290 405 CDD STKc_IRAK 93 362 - -
HCH3g1290 405 MobiDBLite consensus disorder prediction 369 383 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1290 HCH-Chr3:49108702 HCH6g1669 HCH-Chr6:49554733 5.50E-141 dispersed
HCH1g0516 HCH-Chr1:54013798 HCH3g1290 HCH-Chr3:49108702 3.00E-149 wgd
HCH11g0239 HCH-Chr11:2172097 HCH3g1290 HCH-Chr3:49108702 9.00E-144 wgd
HCH2g1138 HCH-Chr2:54046726 HCH3g1290 HCH-Chr3:49108702 3.50E-142 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81428 PF00069 Pkinase 4.30E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1290 - - - 0.0