Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1317 ATGGCAATTTCCAGAATCGCCATCGGAAATGCCGCTGAAATCCGCCACGTTGATGCACTCAAAGCAGCCCTCGCTGAGTTAATCTGCATGCTCATCTTCGTTTTCGCCGGCCAAGGCTCCGGCATGGCTTACAATAAGTTAACGAGCAATGGAGCAGCAACGCCGGCAGGTTTAGTGTCCGCTGCCTTATCTCATGCTTTCGCACTCTTCGTAGCGGTTTCCGTTGGCGCAAACATCTCCGGCGGCCACGTAAACCCTGCTGTTACATTTGGAGCATTCGTCGGAGGGCATATAACTCTTGCAAGAACTGTTCTTTACTGGATTGCACAGTTGCTTGGATCCGTTTTCGCTTGTTTGCTTCTTAAGTTCGCTACCGGCGGATTGGAAACCTCCGCTTTCGCCTTATCGTCCGGCGTCGGTGCATGGAACGCCGTCGTTTTCGAAATCGTCATGACTTTTGGTTTGGTTTATACCGTTTACGCTACCGCAGTCGATCCGAAGAAAGGCGATATTGGGATAATTGCACCGATTGCAATCGGTTTTATCGTCGGTGCTAACATCTTAGCCGGCGGTGCTTTCGACGGTGCGTCGATGAACCCGGCGGTTTCTTTTGGACCCGCTGTTGTGAGTTGGTCTTGGGATAACCATTGGGTGTATTGGTTAGGTCCGTTCGTCGGCTCTGCCATCGCCGCCGTCGTCTACGAGACCGTATTCATCGGCCACAGGAGTCATGAACAGATTTCTTCTGCAGAGTTTTGA 759 51.65 MAISRIAIGNAAEIRHVDALKAALAELICMLIFVFAGQGSGMAYNKLTSNGAATPAGLVSAALSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLARTVLYWIAQLLGSVFACLLLKFATGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWSWDNHWVYWLGPFVGSAIAAVVYETVFIGHRSHEQISSAEF 252
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 50693490 50694248 + evm.model.ptg000005l.200 HCH3g1317 542045
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1317 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 Pfam Major intrinsic protein 13 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
HCH3g1317 252 FunFam Probable aquaporin TIP1-1 4 251 - -
HCH3g1317 252 CDD MIP 21 237 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1317 252 PANTHER AQUAPORIN-8 4 246 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
HCH3g1317 252 SUPERFAMILY Aquaporin-like 13 244 IPR023271 -
HCH3g1317 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0315 HCH-Chr11:2874028 HCH3g1317 HCH-Chr3:50693490 4.30E-91 dispersed
HCH13g0450 HCH-Chr13:3130903 HCH3g1317 HCH-Chr3:50693490 1.10E-102 dispersed
HCH3g1317 HCH-Chr3:50693490 HCH5g0367 HCH-Chr5:2387645 7.30E-75 dispersed
HCH3g1317 HCH-Chr3:50693490 HCH9g0550 HCH-Chr9:3606065 2.10E-98 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1317 K09873 - rcu:8286116 414.846