Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g1317 | ATGGCAATTTCCAGAATCGCCATCGGAAATGCCGCTGAAATCCGCCACGTTGATGCACTCAAAGCAGCCCTCGCTGAGTTAATCTGCATGCTCATCTTCGTTTTCGCCGGCCAAGGCTCCGGCATGGCTTACAATAAGTTAACGAGCAATGGAGCAGCAACGCCGGCAGGTTTAGTGTCCGCTGCCTTATCTCATGCTTTCGCACTCTTCGTAGCGGTTTCCGTTGGCGCAAACATCTCCGGCGGCCACGTAAACCCTGCTGTTACATTTGGAGCATTCGTCGGAGGGCATATAACTCTTGCAAGAACTGTTCTTTACTGGATTGCACAGTTGCTTGGATCCGTTTTCGCTTGTTTGCTTCTTAAGTTCGCTACCGGCGGATTGGAAACCTCCGCTTTCGCCTTATCGTCCGGCGTCGGTGCATGGAACGCCGTCGTTTTCGAAATCGTCATGACTTTTGGTTTGGTTTATACCGTTTACGCTACCGCAGTCGATCCGAAGAAAGGCGATATTGGGATAATTGCACCGATTGCAATCGGTTTTATCGTCGGTGCTAACATCTTAGCCGGCGGTGCTTTCGACGGTGCGTCGATGAACCCGGCGGTTTCTTTTGGACCCGCTGTTGTGAGTTGGTCTTGGGATAACCATTGGGTGTATTGGTTAGGTCCGTTCGTCGGCTCTGCCATCGCCGCCGTCGTCTACGAGACCGTATTCATCGGCCACAGGAGTCATGAACAGATTTCTTCTGCAGAGTTTTGA | 759 | 51.65 | MAISRIAIGNAAEIRHVDALKAALAELICMLIFVFAGQGSGMAYNKLTSNGAATPAGLVSAALSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLARTVLYWIAQLLGSVFACLLLKFATGGLETSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWSWDNHWVYWLGPFVGSAIAAVVYETVFIGHRSHEQISSAEF | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 50693490 | 50694248 | + | evm.model.ptg000005l.200 | HCH3g1317 | 542045 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g1317 | 252 | PRINTS | Major intrinsic protein family signature | 102 | 121 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | PRINTS | Major intrinsic protein family signature | 65 | 89 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | PRINTS | Major intrinsic protein family signature | 180 | 202 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | PRINTS | Major intrinsic protein family signature | 217 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | PRINTS | Major intrinsic protein family signature | 21 | 40 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | PRINTS | Major intrinsic protein family signature | 147 | 165 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | Pfam | Major intrinsic protein | 13 | 234 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | ProSitePatterns | MIP family signature. | 83 | 91 | IPR022357 | - | |
HCH3g1317 | 252 | FunFam | Probable aquaporin TIP1-1 | 4 | 251 | - | - | |
HCH3g1317 | 252 | CDD | MIP | 21 | 237 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH3g1317 | 252 | PANTHER | AQUAPORIN-8 | 4 | 246 | IPR034294 | GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER) | |
HCH3g1317 | 252 | SUPERFAMILY | Aquaporin-like | 13 | 244 | IPR023271 | - | |
HCH3g1317 | 252 | Gene3D | Glycerol uptake facilitator protein. | 4 | 252 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH11g0315 | HCH-Chr11:2874028 | HCH3g1317 | HCH-Chr3:50693490 | 4.30E-91 | dispersed | |
HCH13g0450 | HCH-Chr13:3130903 | HCH3g1317 | HCH-Chr3:50693490 | 1.10E-102 | dispersed | |
HCH3g1317 | HCH-Chr3:50693490 | HCH5g0367 | HCH-Chr5:2387645 | 7.30E-75 | dispersed | |
HCH3g1317 | HCH-Chr3:50693490 | HCH9g0550 | HCH-Chr9:3606065 | 2.10E-98 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH3g1317 | K09873 | - | rcu:8286116 | 414.846 |