Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1344 ATGGCGAAAATCTTAATTTCTTCTTCACCTTTCATTGGCTCTTCTCTTCCATCTCTCTCTCGCCATGGTTTCCACACTCTCCCTCACCGTCGTCTCATATCCACCAAAGTCAAATTCAGCTTCCATGATCTTCCTCCAATCCATACCTTCGATTCCTCTTTCAATTTTAACGCAATTGTTACCAGAGCTGAAAGTCTTCTTTATACACTTGCTGATGCAGCCGTCGCTGTGGATTCAACTGTTTCAGACGTCACCGCATCGGGTTCCGCCGATGCCGCCGTGCCGAAAAATGGCGGCTGGTTCGGGTTTATCTCCGAAGCCATGGAAGTTGTTCTTAAAGTATTGAAGGATGGACTTTCGGCTGTGCACGTGCCGTATGCATATGGATTTGCAATTATATTACTTACTGTTATTGTTAAAATTGCTACATTGCCTCTCACCAAGCAACAGGTTGAGTCAACACTGGCTATGCAAAATCTCCAACCTAAGATTAAAGCCATCCAACAAAGATATGCAGGGAATCAGGAAAGAATACAACTTGAGACATCCCGGCTTTATAAGCAAGCTGGAGTTAATCCACTGGCAGGTTGTCTCCCTACTTTGGCCACCATACCAGTCTGGATTGGACTATACCAAGCCCTTTCTAATGTGGCAAATGAGGGATTGTTGACTGAAGGTTTCTTTTGGATTCCCTCTCTTGGTGGGCCAACTACTATTGCTGCTCGACAGAGTGGATCTGGAATCTCTTGGTTGTTTCCTTTTGTGGATGGCCATCCACCATTGGGCTGGTCTGACACTACAGCATACCTTGTTCTACCTGTTCTCCTCGTCCTCTCTCAGTTTGTATCAATGGAAATCATGAAGCCTCCCCAGACTGATGATCCAGCACAGAAGAACACACTCCTTGTTTTCAAGTTTCTTCCACTCATGATCGGATACTTCTCCTTGTCCGTGCCATCGGGATTATCAATATACTGGTTCACCAATAATGTTCTCAGCACAGCTCAGCAAGTATGGTTACGCAAATTAGGTGGTGCAAAGCCTGCCATAAGTGAGGATGCTGGTGGAATCATAACTGCAGGACGTGCCAAACGAACATCTGAATCGGGGCGAACGGGTGACAGGTTTAGGCAGTTAAAAGAAGAAGAGAAGAAAAAGTTCAGCAAGGCAGCTCAAACAGAAGAGATTCAAACTTTGGCTTCTGAGTCTGATTATGATGAAGAGGCAAAAGATAAGGGTGAGGACACTCTAGAAGAGGCATATGCATCAAATGGTGACAAAGATATCCCAGCTTCTCGACCGAAGAGAAGCAAGCGATCAAAGAGGAAGCGTACAGTATGA 1341 45.26 MAKILISSSPFIGSSLPSLSRHGFHTLPHRRLISTKVKFSFHDLPPIHTFDSSFNFNAIVTRAESLLYTLADAAVAVDSTVSDVTASGSADAAVPKNGGWFGFISEAMEVVLKVLKDGLSAVHVPYAYGFAIILLTVIVKIATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWSDTTAYLVLPVLLVLSQFVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPAISEDAGGIITAGRAKRTSESGRTGDRFRQLKEEEKKKFSKAAQTEEIQTLASESDYDEEAKDKGEDTLEEAYASNGDKDIPASRPKRSKRSKRKRTV 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51120969 51125876 - evm.model.ptg000005l.173 HCH3g1344 542072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1344 446 Pfam 60Kd inner membrane protein 128 342 IPR028055 -
HCH3g1344 446 NCBIfam membrane protein insertase YidC 128 341 IPR028055 -
HCH3g1344 446 CDD 5TM_YidC_Alb3 129 342 IPR047196 -
HCH3g1344 446 MobiDBLite consensus disorder prediction 382 446 - -
HCH3g1344 446 PANTHER OXA1 16 410 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(PANTHER)|GO:0032977(InterPro)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1344 HCH-Chr3:51120969 HCH4g0073 HCH-Chr4:403036 1.20E-120 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1344 K03217 - csv:101217620 695.271