Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1348 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCCAATTGGCAGCAGCAATCAAATCATCATCACCACCATCATCAGCAGATAATAAGCAATGAATCCTCCCAACAGCTTTTATCACTGCCAACGCAACTGCCGCATGCATCACCACCATCTCACGTCGGTAGTGGTGCTAGCTCGATCCGCCGTGGTTCGATGGCGGACCGAGCGCGACTAGCTAACATACCACTTCCGGAGACGGCAGTGAAGTGTCCAAGATGTGAATCCCCCAATACAAAGTTTTGTTACTTCAACAACTACAGCCTTTCTCAACCTCGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACTCGCGGTGGTGCGATGAGAAATGTTCCTGTGGGCGGTGGTTGTCGTCGGAACAAGAAGAGCAAAAGTAGAAGATCGAAGTCTCCGGCGGCTGCCAATGAAACCCAACAACTGACCACAAATTCAAACACAACCAGTACAACACTTCCCTTACACAGCAACACAGAAAATATCATTGGTCATTTGCAGCCTCAACATCCTCAGCTCTCGTTCATGGCTTCTCTTCAGAATTTTACTCGATATGGAACGGGAAATTTAGGGTTAAATTTCAGTGAGATCCAAGCACCAGCTGGTGATATTGGAAATAGCTTAGTGAATCTTCATCATCATCATCAATGGAGGAATTCTCAGAACTTTCCTCTCTCAGGAACCCTAGAAAATCCATCGGGATTATACCCATTATTCCAAATTAACGAAGCTTCTAACGCTCAAAATTCTGATCTAACAGCAAATCCAAGACCTACCCATTTGCCTCCAGTCAAAATTGAAGAAACCCAAGTGCTGAATCTGTTAAAACCATCAAATTTAGAAGTCGATTCAGATCAAAACAATCAGTTTTGGAGCAATGGAAATGCATGGACAGATTTATCAGCTCTCAGTTCTTCTTCCAGTGGCCATATTTCTTGTGACTTCAATCATTAA 990 44.24 MDFSSVPIYLDPPNWQQQSNHHHHHHQQIISNESSQQLLSLPTQLPHASPPSHVGSGASSIRRGSMADRARLANIPLPETAVKCPRCESPNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRNKKSKSRRSKSPAAANETQQLTTNSNTTSTTLPLHSNTENIIGHLQPQHPQLSFMASLQNFTRYGTGNLGLNFSEIQAPAGDIGNSLVNLHHHHQWRNSQNFPLSGTLENPSGLYPLFQINEASNAQNSDLTANPRPTHLPPVKIEETQVLNLLKPSNLEVDSDQNNQFWSNGNAWTDLSALSSSSSGHISCDFNH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51161943 51163129 + evm.model.ptg000005l.169 HCH3g1348 542076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1348 329 MobiDBLite consensus disorder prediction 144 164 - -
HCH3g1348 329 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g1348 329 MobiDBLite consensus disorder prediction 37 59 - -
HCH3g1348 329 MobiDBLite consensus disorder prediction 127 164 - -
HCH3g1348 329 MobiDBLite consensus disorder prediction 12 31 - -
HCH3g1348 329 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g1348 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 212 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g1348 329 MobiDBLite consensus disorder prediction 37 60 - -
HCH3g1348 329 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1348 HCH-Chr3:51161943 HCH8g1222 HCH-Chr8:47617732 1.40E-25 dispersed
HCH8g1166 HCH-Chr8:47246523 HCH3g1348 HCH-Chr3:51161943 4.20E-64 transposed
HCH1g0461 HCH-Chr1:53141110 HCH3g1348 HCH-Chr3:51161943 4.20E-43 wgd
HCH11g0198 HCH-Chr11:1883786 HCH3g1348 HCH-Chr3:51161943 9.20E-47 wgd
HCH13g0472 HCH-Chr13:3272594 HCH3g1348 HCH-Chr3:51161943 1.20E-48 wgd
HCH2g1095 HCH-Chr2:53827983 HCH3g1348 HCH-Chr3:51161943 2.00E-51 wgd
HCH3g1348 HCH-Chr3:51161943 HCH9g0661 HCH-Chr9:4395564 1.90E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33381 PF02701 zf-Dof 1.60E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1348 - - - 0.0