Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g1348 | ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCCAATTGGCAGCAGCAATCAAATCATCATCACCACCATCATCAGCAGATAATAAGCAATGAATCCTCCCAACAGCTTTTATCACTGCCAACGCAACTGCCGCATGCATCACCACCATCTCACGTCGGTAGTGGTGCTAGCTCGATCCGCCGTGGTTCGATGGCGGACCGAGCGCGACTAGCTAACATACCACTTCCGGAGACGGCAGTGAAGTGTCCAAGATGTGAATCCCCCAATACAAAGTTTTGTTACTTCAACAACTACAGCCTTTCTCAACCTCGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACTCGCGGTGGTGCGATGAGAAATGTTCCTGTGGGCGGTGGTTGTCGTCGGAACAAGAAGAGCAAAAGTAGAAGATCGAAGTCTCCGGCGGCTGCCAATGAAACCCAACAACTGACCACAAATTCAAACACAACCAGTACAACACTTCCCTTACACAGCAACACAGAAAATATCATTGGTCATTTGCAGCCTCAACATCCTCAGCTCTCGTTCATGGCTTCTCTTCAGAATTTTACTCGATATGGAACGGGAAATTTAGGGTTAAATTTCAGTGAGATCCAAGCACCAGCTGGTGATATTGGAAATAGCTTAGTGAATCTTCATCATCATCATCAATGGAGGAATTCTCAGAACTTTCCTCTCTCAGGAACCCTAGAAAATCCATCGGGATTATACCCATTATTCCAAATTAACGAAGCTTCTAACGCTCAAAATTCTGATCTAACAGCAAATCCAAGACCTACCCATTTGCCTCCAGTCAAAATTGAAGAAACCCAAGTGCTGAATCTGTTAAAACCATCAAATTTAGAAGTCGATTCAGATCAAAACAATCAGTTTTGGAGCAATGGAAATGCATGGACAGATTTATCAGCTCTCAGTTCTTCTTCCAGTGGCCATATTTCTTGTGACTTCAATCATTAA | 990 | 44.24 | MDFSSVPIYLDPPNWQQQSNHHHHHHQQIISNESSQQLLSLPTQLPHASPPSHVGSGASSIRRGSMADRARLANIPLPETAVKCPRCESPNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRNKKSKSRRSKSPAAANETQQLTTNSNTTSTTLPLHSNTENIIGHLQPQHPQLSFMASLQNFTRYGTGNLGLNFSEIQAPAGDIGNSLVNLHHHHQWRNSQNFPLSGTLENPSGLYPLFQINEASNAQNSDLTANPRPTHLPPVKIEETQVLNLLKPSNLEVDSDQNNQFWSNGNAWTDLSALSSSSSGHISCDFNH | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 51161943 | 51163129 | + | evm.model.ptg000005l.169 | HCH3g1348 | 542076 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g1348 | 329 | MobiDBLite | consensus disorder prediction | 144 | 164 | - | - | |
HCH3g1348 | 329 | ProSitePatterns | Zinc finger Dof-type signature. | 84 | 120 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH3g1348 | 329 | MobiDBLite | consensus disorder prediction | 37 | 59 | - | - | |
HCH3g1348 | 329 | MobiDBLite | consensus disorder prediction | 127 | 164 | - | - | |
HCH3g1348 | 329 | MobiDBLite | consensus disorder prediction | 12 | 31 | - | - | |
HCH3g1348 | 329 | ProSiteProfiles | Zinc finger Dof-type profile. | 82 | 136 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
HCH3g1348 | 329 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 69 | 212 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH3g1348 | 329 | MobiDBLite | consensus disorder prediction | 37 | 60 | - | - | |
HCH3g1348 | 329 | Pfam | Dof domain, zinc finger | 81 | 136 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g1348 | HCH-Chr3:51161943 | HCH8g1222 | HCH-Chr8:47617732 | 1.40E-25 | dispersed | |
HCH8g1166 | HCH-Chr8:47246523 | HCH3g1348 | HCH-Chr3:51161943 | 4.20E-64 | transposed | |
HCH1g0461 | HCH-Chr1:53141110 | HCH3g1348 | HCH-Chr3:51161943 | 4.20E-43 | wgd | |
HCH11g0198 | HCH-Chr11:1883786 | HCH3g1348 | HCH-Chr3:51161943 | 9.20E-47 | wgd | |
HCH13g0472 | HCH-Chr13:3272594 | HCH3g1348 | HCH-Chr3:51161943 | 1.20E-48 | wgd | |
HCH2g1095 | HCH-Chr2:53827983 | HCH3g1348 | HCH-Chr3:51161943 | 2.00E-51 | wgd | |
HCH3g1348 | HCH-Chr3:51161943 | HCH9g0661 | HCH-Chr9:4395564 | 1.90E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33381 | PF02701 | zf-Dof | 1.60E-31 | No_clan | HCH | TF |
Pathway information
