Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1348 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCCAATTGGCAGCAGCAATCAAATCATCATCACCACCATCATCAGCAGATAATAAGCAATGAATCCTCCCAACAGCTTTTATCACTGCCAACGCAACTGCCGCATGCATCACCACCATCTCACGTCGGTAGTGGTGCTAGCTCGATCCGCCGTGGTTCGATGGCGGACCGAGCGCGACTAGCTAACATACCACTTCCGGAGACGGCAGTGAAGTGTCCAAGATGTGAATCCCCCAATACAAAGTTTTGTTACTTCAACAACTACAGCCTTTCTCAACCTCGCCACTTCTGCAAGACTTGCCGCCGCTACTGGACTCGCGGTGGTGCGATGAGAAATGTTCCTGTGGGCGGTGGTTGTCGTCGGAACAAGAAGAGCAAAAGTAGAAGATCGAAGTCTCCGGCGGCTGCCAATGAAACCCAACAACTGACCACAAATTCAAACACAACCAGTACAACACTTCCCTTACACAGCAACACAGAAAATATCATTGGTCATTTGCAGCCTCAACATCCTCAGCTCTCGTTCATGGCTTCTCTTCAGAATTTTACTCGATATGGAACGGGAAATTTAGGGTTAAATTTCAGTGAGATCCAAGCACCAGCTGGTGATATTGGAAATAGCTTAGTGAATCTTCATCATCATCATCAATGGAGGAATTCTCAGAACTTTCCTCTCTCAGGAACCCTAGAAAATCCATCGGGATTATACCCATTATTCCAAATTAACGAAGCTTCTAACGCTCAAAATTCTGATCTAACAGCAAATCCAAGACCTACCCATTTGCCTCCAGTCAAAATTGAAGAAACCCAAGTGCTGAATCTGTTAAAACCATCAAATTTAGAAGTCGATTCAGATCAAAACAATCAGTTTTGGAGCAATGGAAATGCATGGACAGATTTATCAGCTCTCAGTTCTTCTTCCAGTGGCCATATTTCTTGTGACTTCAATCATTAA 990 44.24 MDFSSVPIYLDPPNWQQQSNHHHHHHQQIISNESSQQLLSLPTQLPHASPPSHVGSGASSIRRGSMADRARLANIPLPETAVKCPRCESPNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRNKKSKSRRSKSPAAANETQQLTTNSNTTSTTLPLHSNTENIIGHLQPQHPQLSFMASLQNFTRYGTGNLGLNFSEIQAPAGDIGNSLVNLHHHHQWRNSQNFPLSGTLENPSGLYPLFQINEASNAQNSDLTANPRPTHLPPVKIEETQVLNLLKPSNLEVDSDQNNQFWSNGNAWTDLSALSSSSSGHISCDFNH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51161943 51163129 + evm.model.ptg000005l.169 HCH3g1348 542076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1348 329 MobiDBLite consensus disorder prediction 144 164 - -
HCH3g1348 329 ProSitePatterns Zinc finger Dof-type signature. 84 120 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g1348 329 MobiDBLite consensus disorder prediction 37 59 - -
HCH3g1348 329 MobiDBLite consensus disorder prediction 127 164 - -
HCH3g1348 329 MobiDBLite consensus disorder prediction 12 31 - -
HCH3g1348 329 ProSiteProfiles Zinc finger Dof-type profile. 82 136 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
HCH3g1348 329 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 69 212 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH3g1348 329 MobiDBLite consensus disorder prediction 37 60 - -
HCH3g1348 329 Pfam Dof domain, zinc finger 81 136 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1348 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1348 HCH-Chr3:51161943 HCH8g1222 HCH-Chr8:47617732 1.40E-25 dispersed
HCH8g1166 HCH-Chr8:47246523 HCH3g1348 HCH-Chr3:51161943 4.20E-64 transposed
HCH1g0461 HCH-Chr1:53141110 HCH3g1348 HCH-Chr3:51161943 4.20E-43 wgd
HCH11g0198 HCH-Chr11:1883786 HCH3g1348 HCH-Chr3:51161943 9.20E-47 wgd
HCH13g0472 HCH-Chr13:3272594 HCH3g1348 HCH-Chr3:51161943 1.20E-48 wgd
HCH2g1095 HCH-Chr2:53827983 HCH3g1348 HCH-Chr3:51161943 2.00E-51 wgd
HCH3g1348 HCH-Chr3:51161943 HCH9g0661 HCH-Chr9:4395564 1.90E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT1G29160 56.3 1.5e-45 179.5
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT1G29160 51.2 1.8e-40 162.5
HCH3g0702 . 9 164 C2C2-Dof Transcription Factor Family AT2G34140 56.1 9.8e-47 183.3
HCH14g0987 . 11 158 C2C2-Dof Transcription Factor Family AT2G34140 51.2 7.0e-37 150.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT2G37590 68.8 3.2e-38 156.0
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.2e-38 154.8
HCH3g1348 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 56.0 6.1e-37 151.8
HCH14g0246 . 1 215 C2C2-Dof Transcription Factor Family AT5G66940 51.3 6.9e-48 187.6
HCH9g0661 . 1 137 C2C2-Dof Transcription Factor Family AT5G02460 64.4 3.0e-38 156.4
HCH13g0472 . 1 125 C2C2-Dof Transcription Factor Family AT5G02460 62.6 9.6e-37 151.4
HCH3g1348 . 61 134 C2C2-Dof Transcription Factor Family AT5G02460 87.8 1.6e-36 150.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33381 PF02701 zf-Dof 1.60E-31 No_clan HCH TF