Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1349 ATGGAAGAAGATGAAGGAGTTCTAATTCAGAGCTTGATTGATTTAGTAAATGAGATTGCTTGGATCTCAGATTTCAGGAATACTGTTAAGAAGCAATATTGTAATTTGTCAAGAAGATTGAAGCTTTTGATTCCAATGTTTGAAGAAATTAGGGATAGTAAAGAATCAGTTCCTGAAGAAACTGTTAAAGCTTTGCTTTTGCTCAAAGCAGGTTTGGAATCTGCTAAGAAATTGCTTAAATTTGGAAGTGAAGGGAGCAAGATTTTTCTGGCCTTAGAAAGGGAACAAATTATGAGCAAATTTCATGAGGTAACAGCTCAGTTGGAGCAAGCTTTGGAAGGAATAGCCTACGATACACTTGACATCTCCGATGAAGTTAAAGAACAGGTTGAGCTCGTTCTTGCTCAATTCAGAAGAGCCAAAGGTAGGACCGATGCACCCGACTCTGAGCTGTTTGATGATATCTCTTCCCTTTACGACACGAGCAGTGACTCTGCTATTGATCAAGACCGCCTGAGGAGACTGGCTGAAAAGTTAGAGTTAATGGGAATATCCGACCTAACACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTAGTGATGGAGATCCAGGTGAGAGCATTGAGAAGATGGCGAGGCTGCTCAAGAAAGTAAAGGATTTTATGCAAACAGAGAACCTTGAAATGGACGCTTCTGCAAGAGAAAAGAGTCCTCCGGCAAGTTGTAGTGGACAAGTATCTAGTGACAAGAATCACAAGGCCCCAATCATACCAGATGATTTCCGGTGCCCCATATCCCTGGAGTTGATGAGAGATCCAGTCATTGTCTCAACTGGACAGACATATGAACGTTCTTGCATTGAAAAGTGGCTTGAAGCAGGACATGGGACGTGTCCAAAGACACAACAGACCCTTTCAAGCACTACACTTACCCCGAATTATGTGTTGCGTAGCCTCATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCGCCGAAACGACCCAGCAGTGCTCGACCTAGCAGAAGCTCATCATCTTGCTCACCTGCCGAACGCACAAAGATTGATATTCTACTTTGCAAACTTGCATCTGGAAACCCTGAGGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTAGCAAAGCGAAATGCAGATAATCGTGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTTGGCCTTCTTTCAACTCCAGATTCCCGTGTTCAAGAGCATGCTGTGACAGCACTCCTTAATCTTTCTATATGCGAGGAAAATAAGGGAAGCATTATTTCCTCTGGGGCAGTCCCTGGTATCGTTCTTGTGCTCAAGAAGGGGAGCATGGAAGCTCGAGAGAATGCTGCAGCTACACTTTTCAGCCTTTCAGTTGTGGATGAAAATAAAGTTAGAATCGGTGCCTCAGGAGCTATCCCACCACTTGTTACACTGCTTAGCGAAGGCACTCAAAGGGGTAAGAAAGACGCTGCAACTGCTCTTTTCAATTTGTGCATCTACCAAGGAAACAAGGGAAAAGCAGTGAGAGCTGGTGTAGTTCCAACTTTGATGCAGCTTCTGACAGAACCTGGAACAGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATATTGGCTAGTCATACCGAAGGGAAGGCTGCCATTGGAGCTGCTAAGGCAGTGCCGATTTTGGTAGAGGTTATCGGGACAGGATCACCGAGGAACAAAGAAAATGCGGCGGCAGTTCTTGTGCATCTGTGCTCCGGAGATCAACACAACCACCTATTGGAGGCCAGGAAACTCGGAGTGATGGGTCCATTGTTAGATTTGGCACAAACTGGCACGGATAGAGGCAAGCGAAAAGCCGCACAATTGCTGGATCGAATAAATCGGTTCCTTAAACAGCAAGAGCAGGAAGCTGAGGCACAAGCGCAAACGGAGGCCCAACCTCATAACCACCCATCACAACCAACCTCCACTACAGAAGTTGTTGGCAGCTGA 2004 45.76 MEEDEGVLIQSLIDLVNEIAWISDFRNTVKKQYCNLSRRLKLLIPMFEEIRDSKESVPEETVKALLLLKAGLESAKKLLKFGSEGSKIFLALEREQIMSKFHEVTAQLEQALEGIAYDTLDISDEVKEQVELVLAQFRRAKGRTDAPDSELFDDISSLYDTSSDSAIDQDRLRRLAEKLELMGISDLTQESIALHEMVTASDGDPGESIEKMARLLKKVKDFMQTENLEMDASAREKSPPASCSGQVSSDKNHKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPSRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEENKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHTEGKAAIGAAKAVPILVEVIGTGSPRNKENAAAVLVHLCSGDQHNHLLEARKLGVMGPLLDLAQTGTDRGKRKAAQLLDRINRFLKQQEQEAEAQAQTEAQPHNHPSQPTSTTEVVGS 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51169913 51173830 - evm.model.ptg000005l.168 HCH3g1349 542077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1349 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 331 IPR013083 -
HCH3g1349 667 Gene3D - 494 648 IPR011989 -
HCH3g1349 667 Gene3D - 342 493 IPR011989 -
HCH3g1349 667 MobiDBLite consensus disorder prediction 637 667 - -
HCH3g1349 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 MobiDBLite consensus disorder prediction 231 254 - -
HCH3g1349 667 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 591 632 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g1349 667 MobiDBLite consensus disorder prediction 331 350 - -
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 258 331 - -
HCH3g1349 667 PANTHER U BOX DOMAIN-CONTAINING 27 631 - -
HCH3g1349 667 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 341 492 - -
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 5 118 - -
HCH3g1349 667 Coils Coil 620 644 - -
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 532 651 - -
HCH3g1349 667 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam Mixed lineage kinase domain-like N-terminal domain 27 116 IPR054000 -
HCH3g1349 667 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
HCH3g1349 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SUPERFAMILY RING/U-box 255 334 - -
HCH3g1349 667 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g1349 667 CDD RING-Ubox_PUB 259 311 IPR045210 -
HCH3g1349 667 SUPERFAMILY ARM repeat 356 630 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1349 K27628 - - csv:101218572 1053.89
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0691 HCH-Chr1:55765244 HCH3g1349 HCH-Chr3:51169913 1.40E-119 dispersed
HCH1g1136 HCH-Chr1:58839570 HCH3g1349 HCH-Chr3:51169913 5.90E-35 dispersed
HCH2g0003 HCH-Chr2:245033 HCH3g1349 HCH-Chr3:51169913 1.70E-11 dispersed
HCH2g0608 HCH-Chr2:49912466 HCH3g1349 HCH-Chr3:51169913 9.10E-82 dispersed
HCH3g0309 HCH-Chr3:1961993 HCH3g1349 HCH-Chr3:51169913 6.70E-09 dispersed
HCH3g0327 HCH-Chr3:2070976 HCH3g1349 HCH-Chr3:51169913 1.20E-47 dispersed
HCH3g1349 HCH-Chr3:51169913 HCH9g0828 HCH-Chr9:5823482 1.40E-43 dispersed
HCH4g0858 HCH-Chr4:5497282 HCH3g1349 HCH-Chr3:51169913 4.90E-14 transposed
HCH2g1094 HCH-Chr2:53820840 HCH3g1349 HCH-Chr3:51169913 8.40E-163 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
HCH9g0270 . 1 1039 U-box Gene Family AT5G15400 75.0 0.0e+00 1534.2
HCH2g0003 . 1 834 U-box Gene Family AT5G67340 50.2 1.9e-128 456.8
HCH2g0003 . 196 834 U-box Gene Family AT2G23140 65.4 4.1e-122 435.6
HCH4g0103 . 1 765 U-box Gene Family AT1G24330 59.8 3.4e-248 854.7
HCH1g1136 . 1 756 U-box Gene Family AT1G24330 58.2 4.8e-234 807.7
HCH4g0103 . 1 764 U-box Gene Family AT1G67530 59.6 6.5e-247 850.5
HCH1g1136 . 1 762 U-box Gene Family AT1G67530 58.4 1.7e-231 799.3
HCH14g0857 . 8 367 U-box Gene Family AT4G21350 61.8 2.1e-118 422.5
HCH5g0206 . 134 456 U-box Gene Family AT3G07360 56.7 3.6e-82 302.0
HCH1g0050 . 233 447 U-box Gene Family AT1G71020 65.8 8.8e-77 284.6
HCH10g1311 . 266 454 U-box Gene Family AT1G71020 59.4 1.1e-55 214.5
HCH2g1094 . 253 433 U-box Gene Family AT1G71020 58.3 2.2e-51 200.3
HCH1g0691 . 251 418 U-box Gene Family AT1G71020 60.2 7.0e-50 195.3
HCH3g1349 . 258 430 U-box Gene Family AT1G71020 58.0 2.7e-49 193.4
HCH1g0050 . 20 651 U-box Gene Family AT1G23030 58.0 1.4e-111 400.6
HCH10g1311 . 19 650 U-box Gene Family AT1G23030 55.5 1.2e-99 360.9
HCH2g1094 . 95 637 U-box Gene Family AT2G28830 53.2 4.4e-107 385.6
HCH3g1349 . 92 638 U-box Gene Family AT2G28830 59.0 2.0e-99 360.1
HCH2g1094 . 1 637 U-box Gene Family AT3G46510 67.7 9.3e-170 594.0
HCH3g1349 . 1 637 U-box Gene Family AT3G46510 67.2 5.6e-159 558.1
HCH1g0691 . 15 625 U-box Gene Family AT3G46510 58.5 4.2e-122 435.6
HCH1g0691 . 11 626 U-box Gene Family AT3G54850 69.0 9.2e-167 583.9
HCH2g1094 . 15 644 U-box Gene Family AT3G54850 56.2 2.7e-118 422.9
HCH2g0608 . 77 628 U-box Gene Family AT5G42340 65.8 5.0e-131 465.3
HCH9g0828 . 1 679 U-box Gene Family AT5G01830 57.0 4.2e-202 701.4
HCH3g0732 . 1 714 U-box Gene Family AT1G29340 69.2 3.9e-254 874.4
HCH11g0480 . 2 407 U-box Gene Family AT3G52450 57.5 5.8e-136 481.1
HCH9g1187 . 4 416 U-box Gene Family AT3G52450 55.3 4.0e-129 458.4
HCH11g0480 . 2 407 U-box Gene Family AT2G35930 59.3 7.1e-136 480.7
HCH9g1187 . 2 415 U-box Gene Family AT2G35930 54.6 4.8e-124 441.4
HCH11g0896 . 1 427 U-box Gene Family AT3G19380 62.7 1.2e-143 506.5
HCH11g0896 . 1 427 U-box Gene Family AT1G49780 63.6 1.5e-149 526.2
HCH2g0197 . 1 411 U-box Gene Family AT5G64660 52.8 3.6e-111 398.7
HCH2g0197 . 1 411 U-box Gene Family AT5G09800 51.7 9.4e-104 374.0
HCH2g0197 . 7 411 U-box Gene Family AT3G18710 50.1 1.2e-98 357.1
HCH12g0544 . 1 451 U-box Gene Family AT3G49810 67.8 5.9e-168 587.4
HCH4g0575 . 1 394 U-box Gene Family AT3G49810 65.5 1.1e-142 503.4
HCH12g0544 . 1 451 U-box Gene Family AT5G65920 66.2 1.1e-161 566.6
HCH4g0575 . 1 394 U-box Gene Family AT5G65920 66.0 3.6e-141 498.4
HCH13g1129 . 89 610 U-box Gene Family AT2G45910 54.7 1.6e-155 547.0
HCH5g0667 . 25 822 U-box Gene Family AT4G25160 51.4 4.5e-222 768.1
HCH4g0858 . 34 843 U-box Gene Family AT1G76390 62.0 3.3e-278 954.5
HCH4g0858 . 42 841 U-box Gene Family AT1G20780 62.6 4.7e-285 977.2
HCH4g0103 . 1 767 U-box Gene Family AT1G27910 63.4 5.8e-272 933.7
HCH1g1136 . 1 765 U-box Gene Family AT1G27910 63.2 1.4e-262 902.5
HCH14g0364 . 1 592 U-box Gene Family AT5G67530 75.0 5.8e-264 906.7
HCH7g1556 . 3 157 U-box Gene Family AT5G67530 53.5 2.9e-45 180.3
HCH5g0667 . 12 822 U-box Gene Family AT5G61550 50.2 4.9e-224 774.6
HCH7g1364 . 1 518 U-box Gene Family AT1G04510 74.7 3.6e-225 777.7
HCH7g1364 . 1 485 U-box Gene Family AT2G33340 74.7 1.9e-212 735.3
HCH5g0205 . 5 273 U-box Gene Family AT3G07370 66.2 2.5e-100 362.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004307 2 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 43