Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1349 ATGGAAGAAGATGAAGGAGTTCTAATTCAGAGCTTGATTGATTTAGTAAATGAGATTGCTTGGATCTCAGATTTCAGGAATACTGTTAAGAAGCAATATTGTAATTTGTCAAGAAGATTGAAGCTTTTGATTCCAATGTTTGAAGAAATTAGGGATAGTAAAGAATCAGTTCCTGAAGAAACTGTTAAAGCTTTGCTTTTGCTCAAAGCAGGTTTGGAATCTGCTAAGAAATTGCTTAAATTTGGAAGTGAAGGGAGCAAGATTTTTCTGGCCTTAGAAAGGGAACAAATTATGAGCAAATTTCATGAGGTAACAGCTCAGTTGGAGCAAGCTTTGGAAGGAATAGCCTACGATACACTTGACATCTCCGATGAAGTTAAAGAACAGGTTGAGCTCGTTCTTGCTCAATTCAGAAGAGCCAAAGGTAGGACCGATGCACCCGACTCTGAGCTGTTTGATGATATCTCTTCCCTTTACGACACGAGCAGTGACTCTGCTATTGATCAAGACCGCCTGAGGAGACTGGCTGAAAAGTTAGAGTTAATGGGAATATCCGACCTAACACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTAGTGATGGAGATCCAGGTGAGAGCATTGAGAAGATGGCGAGGCTGCTCAAGAAAGTAAAGGATTTTATGCAAACAGAGAACCTTGAAATGGACGCTTCTGCAAGAGAAAAGAGTCCTCCGGCAAGTTGTAGTGGACAAGTATCTAGTGACAAGAATCACAAGGCCCCAATCATACCAGATGATTTCCGGTGCCCCATATCCCTGGAGTTGATGAGAGATCCAGTCATTGTCTCAACTGGACAGACATATGAACGTTCTTGCATTGAAAAGTGGCTTGAAGCAGGACATGGGACGTGTCCAAAGACACAACAGACCCTTTCAAGCACTACACTTACCCCGAATTATGTGTTGCGTAGCCTCATAGCCCAGTGGTGCGAGGCTAATGGTATTGAACCGCCGAAACGACCCAGCAGTGCTCGACCTAGCAGAAGCTCATCATCTTGCTCACCTGCCGAACGCACAAAGATTGATATTCTACTTTGCAAACTTGCATCTGGAAACCCTGAGGACCAACGATCTGCAGCTGGTGAGATCCGACTTCTAGCAAAGCGAAATGCAGATAATCGTGTTGCCATTGCTGAGGCTGGTGCAATACCTCTCCTTGTTGGCCTTCTTTCAACTCCAGATTCCCGTGTTCAAGAGCATGCTGTGACAGCACTCCTTAATCTTTCTATATGCGAGGAAAATAAGGGAAGCATTATTTCCTCTGGGGCAGTCCCTGGTATCGTTCTTGTGCTCAAGAAGGGGAGCATGGAAGCTCGAGAGAATGCTGCAGCTACACTTTTCAGCCTTTCAGTTGTGGATGAAAATAAAGTTAGAATCGGTGCCTCAGGAGCTATCCCACCACTTGTTACACTGCTTAGCGAAGGCACTCAAAGGGGTAAGAAAGACGCTGCAACTGCTCTTTTCAATTTGTGCATCTACCAAGGAAACAAGGGAAAAGCAGTGAGAGCTGGTGTAGTTCCAACTTTGATGCAGCTTCTGACAGAACCTGGAACAGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATATTGGCTAGTCATACCGAAGGGAAGGCTGCCATTGGAGCTGCTAAGGCAGTGCCGATTTTGGTAGAGGTTATCGGGACAGGATCACCGAGGAACAAAGAAAATGCGGCGGCAGTTCTTGTGCATCTGTGCTCCGGAGATCAACACAACCACCTATTGGAGGCCAGGAAACTCGGAGTGATGGGTCCATTGTTAGATTTGGCACAAACTGGCACGGATAGAGGCAAGCGAAAAGCCGCACAATTGCTGGATCGAATAAATCGGTTCCTTAAACAGCAAGAGCAGGAAGCTGAGGCACAAGCGCAAACGGAGGCCCAACCTCATAACCACCCATCACAACCAACCTCCACTACAGAAGTTGTTGGCAGCTGA 2004 45.76 MEEDEGVLIQSLIDLVNEIAWISDFRNTVKKQYCNLSRRLKLLIPMFEEIRDSKESVPEETVKALLLLKAGLESAKKLLKFGSEGSKIFLALEREQIMSKFHEVTAQLEQALEGIAYDTLDISDEVKEQVELVLAQFRRAKGRTDAPDSELFDDISSLYDTSSDSAIDQDRLRRLAEKLELMGISDLTQESIALHEMVTASDGDPGESIEKMARLLKKVKDFMQTENLEMDASAREKSPPASCSGQVSSDKNHKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPSRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEENKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHTEGKAAIGAAKAVPILVEVIGTGSPRNKENAAAVLVHLCSGDQHNHLLEARKLGVMGPLLDLAQTGTDRGKRKAAQLLDRINRFLKQQEQEAEAQAQTEAQPHNHPSQPTSTTEVVGS 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51169913 51173830 - evm.model.ptg000005l.168 HCH3g1349 542077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1349 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 331 IPR013083 -
HCH3g1349 667 Gene3D - 494 648 IPR011989 -
HCH3g1349 667 Gene3D - 342 493 IPR011989 -
HCH3g1349 667 MobiDBLite consensus disorder prediction 637 667 - -
HCH3g1349 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 MobiDBLite consensus disorder prediction 231 254 - -
HCH3g1349 667 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 591 632 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g1349 667 MobiDBLite consensus disorder prediction 331 350 - -
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 258 331 - -
HCH3g1349 667 PANTHER U BOX DOMAIN-CONTAINING 27 631 - -
HCH3g1349 667 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 341 492 - -
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 5 118 - -
HCH3g1349 667 Coils Coil 620 644 - -
HCH3g1349 667 FunFam RING-type E3 ubiquitin transferase 532 651 - -
HCH3g1349 667 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 Pfam Mixed lineage kinase domain-like N-terminal domain 27 116 IPR054000 -
HCH3g1349 667 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
HCH3g1349 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
HCH3g1349 667 SUPERFAMILY RING/U-box 255 334 - -
HCH3g1349 667 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
HCH3g1349 667 CDD RING-Ubox_PUB 259 311 IPR045210 -
HCH3g1349 667 SUPERFAMILY ARM repeat 356 630 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0691 HCH-Chr1:55765244 HCH3g1349 HCH-Chr3:51169913 1.40E-119 dispersed
HCH1g1136 HCH-Chr1:58839570 HCH3g1349 HCH-Chr3:51169913 5.90E-35 dispersed
HCH2g0003 HCH-Chr2:245033 HCH3g1349 HCH-Chr3:51169913 1.70E-11 dispersed
HCH2g0608 HCH-Chr2:49912466 HCH3g1349 HCH-Chr3:51169913 9.10E-82 dispersed
HCH3g0309 HCH-Chr3:1961993 HCH3g1349 HCH-Chr3:51169913 6.70E-09 dispersed
HCH3g0327 HCH-Chr3:2070976 HCH3g1349 HCH-Chr3:51169913 1.20E-47 dispersed
HCH3g1349 HCH-Chr3:51169913 HCH9g0828 HCH-Chr9:5823482 1.40E-43 dispersed
HCH4g0858 HCH-Chr4:5497282 HCH3g1349 HCH-Chr3:51169913 4.90E-14 transposed
HCH2g1094 HCH-Chr2:53820840 HCH3g1349 HCH-Chr3:51169913 8.40E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1349 K27628 - csv:101218572 1053.89