Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1367 ATGATAATGGGTCCATCAATTCTAGTCTATGTCTTGTCTCTTTTCTCAATAATGTGGATTGCCGAAGCCCGAATCCCCGGAGTTTACTCCGGCGGTTCATGGCAAGCCGCTCATGCCACATTCTACGGCGGCTCCGACGCCTCCGGCACAATGGGTGGAGCTTGTGGCTATGGAAACTTGTATAGTCAAGGCTACGGTGTTAACACTGCCGCATTAAGTACGGCTTTGTTTAACAATGGGTTGAGCTGCGGCGCTTGCTTTGAGCTCAAATGTGCCAATGACCCAAGATGGTGCCATTCCGGCAGCCCCTCCATTATAATCACGGCCACTAACTTTTGCCCTCCCAATTTCGCTCAGCCCAGTGATAATGGTGGATGGTGTAACCCACCTCGCCCACATTTCGACCTTGCCATGCCTATGTTTCTCAAGATCGCTGAGTATCGCGCCGGTATCGTCCCCGTCGCCTACCGCCGGGTGCCATGCCGGAAGGTGGGAGGGATACGGTACACGATCCATGGGTTCCGATACTTCAATTTGGTATTAATCACGAACGTGGGAGGTGCAGGGGATATCGTGAGGGTGAGTATAAAAGGAACAAAGACTGGGTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCGGTCTTGGTGGGCCAGTCTCTCTCTTTTAGAATCACCGGCAGTGACAGAAGGACATCAACTTCCTTGAACGTTGTGCCTTCTAATTGGCAGTTTGGTCAAACATTCACCGGCAAGAATTTTAGAATTTGA 783 51.09 MIMGPSILVYVLSLFSIMWIAEARIPGVYSGGSWQAAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFELKCANDPRWCHSGSPSIIITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKVGGIRYTIHGFRYFNLVLITNVGGAGDIVRVSIKGTKTGWMSMSRNWGQNWQSNAVLVGQSLSFRITGSDRRTSTSLNVVPSNWQFGQTFTGKNFRI 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51405928 51407332 - evm.model.ptg000005l.150 HCH3g1367 542095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1367 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
HCH3g1367 260 SMART dpbb_1 69 156 IPR007112 -
HCH3g1367 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576(InterPro)
HCH3g1367 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576(InterPro)
HCH3g1367 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576(InterPro)
HCH3g1367 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576(InterPro)
HCH3g1367 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576(InterPro)
HCH3g1367 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576(InterPro)
HCH3g1367 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
HCH3g1367 260 FunFam Expansin 166 258 - -
HCH3g1367 260 FunFam Expansin 23 162 - -
HCH3g1367 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 CDD DPBB_EXPA_N 34 161 - -
HCH3g1367 260 Gene3D - 20 162 IPR036908 -
HCH3g1367 260 PANTHER EXPANSIN-A15 15 258 IPR002963 GO:0009664(InterPro)
HCH3g1367 260 Gene3D - 167 258 IPR036749 -
HCH3g1367 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
HCH3g1367 260 SUPERFAMILY PHL pollen allergen 165 255 IPR036749 -
HCH3g1367 260 Pfam Lytic transglycolase 69 156 IPR009009 -
HCH3g1367 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0070 HCH-Chr3:402889 HCH3g1367 HCH-Chr3:51405928 5.30E-83 dispersed
HCH3g1367 HCH-Chr3:51405928 HCH4g0896 HCH-Chr4:5762602 5.80E-99 dispersed
HCH5g0455 HCH-Chr5:3064844 HCH3g1367 HCH-Chr3:51405928 1.30E-77 transposed
HCH1g0451 HCH-Chr1:53033480 HCH3g1367 HCH-Chr3:51405928 6.10E-133 wgd
HCH13g0492 HCH-Chr13:3426508 HCH3g1367 HCH-Chr3:51405928 1.90E-118 wgd
HCH2g1077 HCH-Chr2:53739421 HCH3g1367 HCH-Chr3:51405928 6.50E-135 wgd
HCH3g1367 HCH-Chr3:51405928 HCH9g0677 HCH-Chr9:4503623 1.40E-132 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1367 - - - 0.0