Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1378 ATGTTGGCATCGGCCGGTTATCTTTTGACAATGCTTGGTGATTGTATTATACTTTTTGCAACTAGAAGTAAGCGAAAGGGAGATAAAGTGGAGGTGGAAGAAGGGAAATCGGCGGAGGAGATTGCTAAAGAAGTGGCGGGTTCCTACCATAACCCTATTTTCTTGAAGACTACGTCTCTTGGAGACACGATTCTCCTCATCATTGCTTTGTGTTTTCATTCAGTTTTTGAGGGAATTGCTGTTGGAATTGCAGCGACGAAAGAAGATGCATGGAAGAATCTATGGACCATTTCACTGCACAAAATATTTGCAGCCATTGCAATGGGCATAGCGCTTCTGAAGATGCTACCCAAAAGGCCTTTCTTGATAACCAGTGCTTATTCATTCGCCTTCGCCATCTCGAGCCCCATCGGTGTTGGTATCGGAATCGCTATCGATGCCACGACTCAAGGTCCAGCGGCTGACTGGACGTATGCCATCTCCATGGGACTTGCTTGTGGCGTATTCATCTACGTTGCCATCAACCATCTCATTGCCAAGGGTTTCAAGGCACAAGATTTCTGCCATTTTGATCAGCCTCATTACAAGTTTCTTGCTGTGCTCTTGGGGATCGGTGTTATAGCAGTTGTTATGATTTGGGACACTTGA 648 45.52 MLASAGYLLTMLGDCIILFATRSKRKGDKVEVEEGKSAEEIAKEVAGSYHNPIFLKTTSLGDTILLIIALCFHSVFEGIAVGIAATKEDAWKNLWTISLHKIFAAIAMGIALLKMLPKRPFLITSAYSFAFAISSPIGVGIGIAIDATTQGPAADWTYAISMGLACGVFIYVAINHLIAKGFKAQDFCHFDQPHYKFLAVLLGIGVIAVVMIWDT 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51540787 51542017 + evm.model.ptg000005l.139 HCH3g1378 542106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1378 215 PANTHER ZINC/IRON TRANSPORTER 2 213 - GO:0005385(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
HCH3g1378 215 Pfam ZIP Zinc transporter 56 210 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1259 HCH-Chr12:13183158 HCH3g1378 HCH-Chr3:51540787 3.20E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1378 K14709 - mdm:103420620 335.495