Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g1387 | ATGTTTCTTGTTTTGTTTTTCTCTGCTCTTTTGCTTCTTCTACTCCTCCTTCAATGGTATCACCCAAAACAAAAACTTCTCCCTCCTGGTTCAATGGGTTGGCCTTATATAGGAGAAACCTTCAAACTTTATACTGAAAACCCCAATTCCTTCTTCTCAATCAGGCAAAAAAGGTATGGAGATATATTTAAGACTCATATATTGGGATGTCCATGTGTGATGATTTCAAGTCCAGAAGCAGCAAAGGTTGTTCTTGTTAGTAAAGCTCATTTGTTCAAACCAACATATCCACCAAGCAAAGAGAAGATGATAGGACCTCAGGCTTTGTTTTTCCACCAAGGAGATTACCATTCCACTCTGAAAAAGCTGGTCCAAGCTTCTTTTTTGCCTTCTGTTATCAGAAATTCTGTCTCTCAGATTGAGAAAATTGTTCTCAAACTTCTCCCCACTTGGAACACTCCCAATTCAATCAACACGTTGCAGGAAATGAAAAGGTTTGCTTTTGATGTGGCTGTGATCTCTGCCTTTGGATACCAGCAAGACTTGGAAATTGAAAGAATCAAACATTTGTACCAATGCCTTGAGAAAGGTTACAATTCAATGCCTCTTGATCTTCCTGGAACCCCTTTTCACAAGGCAATGAAGGCAAGGAAATTGCTGAATGAGACATTAAAGAGATTGATAGAGAAGAGAAGGGAAAACAAGATGGGACATGGAGGTGGTTTGTTGGGGGTGCTATTGGGTGGTGCTGACGACAAAAACATTAAGATGAAACCTCTCACTGATTCTCAGATTGCTGATAATATTATTGGAGTTATATTTGCTGCTCAAGACACGACCGCCAGTGTCTTGACTTGGATTCTTAAGTACTTACATGACAATCATGATCTTCTTGAAGCTGTTAAGAAAGAACAAGAGGCAATCTTAGAAGGAAAGCTGTTGCAAGGAAATCGTGGCCTTACATGGGGTGATACCAGGCGAATGCCACTAACTAGCCGGGTAATACAAGAAACCCTAAGGACAGCAAGTATTCTATCATTCACATTCAGGGAAGCAGTAGAAGATGTCGAGTTTGAAGGTTACTTAATCCCAAGAGGATGGAAAGTTCTTCCACTATTCAGAAGCATTCATCACTCTCCTGATTTCTTCCCACAACCCCACAAATTTGACCCTTCAAGATTTGAGGTGCCACCAAGACCAAACACGTTCTTGCCATTTGGAAATGGAGTGCACTCGTGTCCAGGCAATGAGCTGGCTAAGCTTGAAATGCTCGTCCTTCTCCACCACCTCACTACCACTTATAGGTCGGTCCTCTCTTGCGTTTAG | 1326 | 41.48 | MFLVLFFSALLLLLLLLQWYHPKQKLLPPGSMGWPYIGETFKLYTENPNSFFSIRQKRYGDIFKTHILGCPCVMISSPEAAKVVLVSKAHLFKPTYPPSKEKMIGPQALFFHQGDYHSTLKKLVQASFLPSVIRNSVSQIEKIVLKLLPTWNTPNSINTLQEMKRFAFDVAVISAFGYQQDLEIERIKHLYQCLEKGYNSMPLDLPGTPFHKAMKARKLLNETLKRLIEKRRENKMGHGGGLLGVLLGGADDKNIKMKPLTDSQIADNIIGVIFAAQDTTASVLTWILKYLHDNHDLLEAVKKEQEAILEGKLLQGNRGLTWGDTRRMPLTSRVIQETLRTASILSFTFREAVEDVEFEGYLIPRGWKVLPLFRSIHHSPDFFPQPHKFDPSRFEVPPRPNTFLPFGNGVHSCPGNELAKLEMLVLLHHLTTTYRSVLSCV | 441 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 51854404 | 51857489 | + | evm.model.ptg000005l.130 | HCH3g1387 | 542115 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g1387 | 441 | Pfam | Cytochrome P450 | 28 | 434 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | P450 superfamily signature | 275 | 292 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | P450 superfamily signature | 404 | 413 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | P450 superfamily signature | 333 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | P450 superfamily signature | 413 | 424 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | CDD | CYP90-like | 55 | 438 | - | - | |
| HCH3g1387 | 441 | SUPERFAMILY | Cytochrome P450 | 19 | 435 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | Gene3D | Cytochrome P450 | 20 | 440 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | FunFam | Abscisic acid 8 | 18 | 440 | - | - | |
| HCH3g1387 | 441 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 406 | 415 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH3g1387 | 441 | PANTHER | CYTOCHROME P450 26 | 27 | 434 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| HCH3g1387 | 441 | PRINTS | E-class P450 group I signature | 284 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | E-class P450 group I signature | 332 | 350 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | E-class P450 group I signature | 264 | 281 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | E-class P450 group I signature | 372 | 396 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | E-class P450 group I signature | 56 | 75 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | E-class P450 group I signature | 403 | 413 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1387 | 441 | PRINTS | E-class P450 group I signature | 413 | 436 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH3g1387 | HCH-Chr3:51854404 | HCH6g1312 | HCH-Chr6:47261063 | 1.50E-152 | dispersed | |
| HCH3g1387 | HCH-Chr3:51854404 | HCH4g0644 | HCH-Chr4:4222083 | 2.90E-143 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH3g1387 | K09843 | - | csv:101216531 | 712.99 |