Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1389 ATGGGAGAGGAAGGGAAAATGATTGAATATGAAAGCGGAGGAGATGATGAAGAGAGAGTATATGAATGGGAAAAGGGATTGCCTAACTCCGACGATCTAACTCCTCTTTCTCAAACGTTGATTCCACCGGAGCTTGCATCGGCGTTTAGTATAACTACCGGACCTTACCGGACGGTTACGGATGTTAATAGAGCTTCGAAAGATACCGTTGCGAATCTACGTGGCTTACAATCGCAGGCGTTTTCGTCGAATAATTTTAATTTGAAGTCGTTTAATGATGATCGGATTCCGGAGAGGGATGCCGGTTCGGATCCGATGGTGGTTGAGGAAGAGGAGGAGGAAGAGGAAGAGGAGGTTGCTGGTTCGGATTCTAGGAAATTGATGAAGGTTGTTGATTGTGTGGAGGAGGCTGATTCGGTTCTAAGGACGGTGGCCGATAATTCGATAGATGATCCGTCGTCGGCGAGGACTTTGAAGAGACCTAGGCTTGTTTGGACTCCTCAATTACATAAGAGATTTGTGGATGTTGTTGCTCATTTAGGAATTAAGAATGCTGTTCCTAAGACTATTATGCAATTGATGAATGTGGAAGGCTTGACACGTGAGAATGTTGCAAGCCATCTTCAAAAATATAGACTTTATTTGAAGAGGATGCAGGGCTCCTCGAACGAGGGTCCGTCCTCGCCAGACCCGCCGAGCTTGCACGAGTCTGCAAGCACTGGTCATGTTAATGCAAATGGGCATTTACCAGTTCCTCCTCCGATGGCGTATGGACCGCCACCGCCGATGATGCCTATGCCGTATGGTCATCCTCATAGCTATATGGGAATGCCCGGCAGCGCACCGGGATATCATCATCCCTATATGATGCATCAGAGAGATTGGCAGGGGAATAAATATGGCTCGGTTATGCCTTATCCTCATGTACCTCCTCATACTAGTGATAAGTGA 951 47.0 MGEEGKMIEYESGGDDEERVYEWEKGLPNSDDLTPLSQTLIPPELASAFSITTGPYRTVTDVNRASKDTVANLRGLQSQAFSSNNFNLKSFNDDRIPERDAGSDPMVVEEEEEEEEEEVAGSDSRKLMKVVDCVEEADSVLRTVADNSIDDPSSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDPPSLHESASTGHVNANGHLPVPPPMAYGPPPPMMPMPYGHPHSYMGMPGSAPGYHHPYMMHQRDWQGNKYGSVMPYPHVPPHTSDK 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51872592 51873542 + evm.model.ptg000005l.128 HCH3g1389 542117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1389 316 MobiDBLite consensus disorder prediction 219 253 - -
HCH3g1389 316 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 292 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH3g1389 316 SUPERFAMILY Homeodomain-like 157 217 IPR009057 -
HCH3g1389 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 161 213 IPR006447 GO:0003677(InterPro)
HCH3g1389 316 Gene3D - 157 219 - -
HCH3g1389 316 Pfam Myb-like DNA-binding domain 163 212 IPR001005 -
HCH3g1389 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 216 IPR017930 -
HCH3g1389 316 MobiDBLite consensus disorder prediction 220 244 - -
HCH3g1389 316 MobiDBLite consensus disorder prediction 92 117 - -
HCH3g1389 316 FunFam Two-component response regulator 156 219 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1389 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1389 HCH-Chr3:51872592 HCH9g0976 HCH-Chr9:7294860 2.30E-33 dispersed
HCH2g1065 HCH-Chr2:53664572 HCH3g1389 HCH-Chr3:51872592 1.10E-26 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH5g0246 . 176 377 G2-like Transcription Factor Family AT5G16560 51.2 9.4e-40 161.4
HCH4g0682 . 1 183 G2-like Transcription Factor Family AT5G42630 59.5 8.3e-46 180.6
HCH12g0669 . 12 175 G2-like Transcription Factor Family AT5G42630 60.2 1.4e-40 163.3
HCH8g0792 . 3 339 G2-like Transcription Factor Family AT2G03500 50.4 6.0e-77 285.0
HCH1g0801 . 1 259 G2-like Transcription Factor Family AT1G25550 53.7 3.3e-52 202.2
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT1G25550 54.6 8.1e-51 197.6
HCH1g0801 . 19 269 G2-like Transcription Factor Family AT3G25790 50.2 2.6e-43 172.6
HCH10g1250 . 20 269 G2-like Transcription Factor Family AT3G25790 51.3 6.0e-40 161.4
HCH3g1389 . 1 263 G2-like Transcription Factor Family AT3G46640 52.0 5.4e-54 208.4
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT5G05090 55.6 3.6e-72 268.5
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT5G05090 55.5 3.7e-69 258.5
HCH7g1427 . 13 309 G2-like Transcription Factor Family AT4G13640 53.3 4.6e-52 201.8
HCH7g1427 . 13 261 G2-like Transcription Factor Family AT3G24120 59.0 1.5e-66 250.0
HCH2g0956 . 22 177 G2-like Transcription Factor Family AT3G24120 59.5 1.8e-40 163.3
HCH7g0014 . 21 163 G2-like Transcription Factor Family AT3G24120 61.6 9.1e-40 161.0
HCH4g0893 . 6 230 G2-like Transcription Factor Family AT1G69580 55.9 2.0e-51 199.9
HCH7g0014 . 1 385 G2-like Transcription Factor Family AT1G79430 53.4 7.2e-84 307.8
HCH2g0956 . 1 363 G2-like Transcription Factor Family AT1G79430 56.3 4.7e-83 305.1
HCH7g1427 . 38 197 G2-like Transcription Factor Family AT1G79430 61.4 2.3e-37 153.3
HCH14g0730 . 54 292 G2-like Transcription Factor Family AT2G01060 60.9 2.1e-55 212.6
HCH9g0976 . 1 300 G2-like Transcription Factor Family AT3G10760 61.3 2.2e-90 329.3
HCH9g1278 . 1 298 G2-like Transcription Factor Family AT3G10760 61.3 1.6e-85 313.2
HCH9g0976 . 1 201 G2-like Transcription Factor Family AT2G40970 61.6 7.8e-61 230.7
HCH9g1278 . 1 201 G2-like Transcription Factor Family AT2G40970 58.3 4.3e-59 224.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001910 1 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 2 3 2 3 2 2 2 1 2 2 6 4 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33383 PF00249 Myb_DNA-binding 1.30E-08 CL0123 HCH TF