Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1389 ATGGGAGAGGAAGGGAAAATGATTGAATATGAAAGCGGAGGAGATGATGAAGAGAGAGTATATGAATGGGAAAAGGGATTGCCTAACTCCGACGATCTAACTCCTCTTTCTCAAACGTTGATTCCACCGGAGCTTGCATCGGCGTTTAGTATAACTACCGGACCTTACCGGACGGTTACGGATGTTAATAGAGCTTCGAAAGATACCGTTGCGAATCTACGTGGCTTACAATCGCAGGCGTTTTCGTCGAATAATTTTAATTTGAAGTCGTTTAATGATGATCGGATTCCGGAGAGGGATGCCGGTTCGGATCCGATGGTGGTTGAGGAAGAGGAGGAGGAAGAGGAAGAGGAGGTTGCTGGTTCGGATTCTAGGAAATTGATGAAGGTTGTTGATTGTGTGGAGGAGGCTGATTCGGTTCTAAGGACGGTGGCCGATAATTCGATAGATGATCCGTCGTCGGCGAGGACTTTGAAGAGACCTAGGCTTGTTTGGACTCCTCAATTACATAAGAGATTTGTGGATGTTGTTGCTCATTTAGGAATTAAGAATGCTGTTCCTAAGACTATTATGCAATTGATGAATGTGGAAGGCTTGACACGTGAGAATGTTGCAAGCCATCTTCAAAAATATAGACTTTATTTGAAGAGGATGCAGGGCTCCTCGAACGAGGGTCCGTCCTCGCCAGACCCGCCGAGCTTGCACGAGTCTGCAAGCACTGGTCATGTTAATGCAAATGGGCATTTACCAGTTCCTCCTCCGATGGCGTATGGACCGCCACCGCCGATGATGCCTATGCCGTATGGTCATCCTCATAGCTATATGGGAATGCCCGGCAGCGCACCGGGATATCATCATCCCTATATGATGCATCAGAGAGATTGGCAGGGGAATAAATATGGCTCGGTTATGCCTTATCCTCATGTACCTCCTCATACTAGTGATAAGTGA 951 47.0 MGEEGKMIEYESGGDDEERVYEWEKGLPNSDDLTPLSQTLIPPELASAFSITTGPYRTVTDVNRASKDTVANLRGLQSQAFSSNNFNLKSFNDDRIPERDAGSDPMVVEEEEEEEEEEVAGSDSRKLMKVVDCVEEADSVLRTVADNSIDDPSSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDPPSLHESASTGHVNANGHLPVPPPMAYGPPPPMMPMPYGHPHSYMGMPGSAPGYHHPYMMHQRDWQGNKYGSVMPYPHVPPHTSDK 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51872592 51873542 + evm.model.ptg000005l.128 HCH3g1389 542117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1389 316 MobiDBLite consensus disorder prediction 219 253 - -
HCH3g1389 316 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 15 292 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
HCH3g1389 316 SUPERFAMILY Homeodomain-like 157 217 IPR009057 -
HCH3g1389 316 NCBIfam myb-like DNA-binding domain, SHAQKYF class 161 213 IPR006447 GO:0003677(InterPro)
HCH3g1389 316 Gene3D - 157 219 - -
HCH3g1389 316 Pfam Myb-like DNA-binding domain 163 212 IPR001005 -
HCH3g1389 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 216 IPR017930 -
HCH3g1389 316 MobiDBLite consensus disorder prediction 220 244 - -
HCH3g1389 316 MobiDBLite consensus disorder prediction 92 117 - -
HCH3g1389 316 FunFam Two-component response regulator 156 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1389 HCH-Chr3:51872592 HCH9g0976 HCH-Chr9:7294860 2.30E-33 dispersed
HCH2g1065 HCH-Chr2:53664572 HCH3g1389 HCH-Chr3:51872592 1.10E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33383 PF00249 Myb_DNA-binding 1.30E-08 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1389 - - - 0.0