Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH3g1389 | ATGGGAGAGGAAGGGAAAATGATTGAATATGAAAGCGGAGGAGATGATGAAGAGAGAGTATATGAATGGGAAAAGGGATTGCCTAACTCCGACGATCTAACTCCTCTTTCTCAAACGTTGATTCCACCGGAGCTTGCATCGGCGTTTAGTATAACTACCGGACCTTACCGGACGGTTACGGATGTTAATAGAGCTTCGAAAGATACCGTTGCGAATCTACGTGGCTTACAATCGCAGGCGTTTTCGTCGAATAATTTTAATTTGAAGTCGTTTAATGATGATCGGATTCCGGAGAGGGATGCCGGTTCGGATCCGATGGTGGTTGAGGAAGAGGAGGAGGAAGAGGAAGAGGAGGTTGCTGGTTCGGATTCTAGGAAATTGATGAAGGTTGTTGATTGTGTGGAGGAGGCTGATTCGGTTCTAAGGACGGTGGCCGATAATTCGATAGATGATCCGTCGTCGGCGAGGACTTTGAAGAGACCTAGGCTTGTTTGGACTCCTCAATTACATAAGAGATTTGTGGATGTTGTTGCTCATTTAGGAATTAAGAATGCTGTTCCTAAGACTATTATGCAATTGATGAATGTGGAAGGCTTGACACGTGAGAATGTTGCAAGCCATCTTCAAAAATATAGACTTTATTTGAAGAGGATGCAGGGCTCCTCGAACGAGGGTCCGTCCTCGCCAGACCCGCCGAGCTTGCACGAGTCTGCAAGCACTGGTCATGTTAATGCAAATGGGCATTTACCAGTTCCTCCTCCGATGGCGTATGGACCGCCACCGCCGATGATGCCTATGCCGTATGGTCATCCTCATAGCTATATGGGAATGCCCGGCAGCGCACCGGGATATCATCATCCCTATATGATGCATCAGAGAGATTGGCAGGGGAATAAATATGGCTCGGTTATGCCTTATCCTCATGTACCTCCTCATACTAGTGATAAGTGA | 951 | 47.0 | MGEEGKMIEYESGGDDEERVYEWEKGLPNSDDLTPLSQTLIPPELASAFSITTGPYRTVTDVNRASKDTVANLRGLQSQAFSSNNFNLKSFNDDRIPERDAGSDPMVVEEEEEEEEEEVAGSDSRKLMKVVDCVEEADSVLRTVADNSIDDPSSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDPPSLHESASTGHVNANGHLPVPPPMAYGPPPPMMPMPYGHPHSYMGMPGSAPGYHHPYMMHQRDWQGNKYGSVMPYPHVPPHTSDK | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 51872592 | 51873542 | + | evm.model.ptg000005l.128 | HCH3g1389 | 542117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH3g1389 | 316 | MobiDBLite | consensus disorder prediction | 219 | 253 | - | - | |
HCH3g1389 | 316 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 15 | 292 | IPR044841 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
HCH3g1389 | 316 | SUPERFAMILY | Homeodomain-like | 157 | 217 | IPR009057 | - | |
HCH3g1389 | 316 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 161 | 213 | IPR006447 | GO:0003677(InterPro) | |
HCH3g1389 | 316 | Gene3D | - | 157 | 219 | - | - | |
HCH3g1389 | 316 | Pfam | Myb-like DNA-binding domain | 163 | 212 | IPR001005 | - | |
HCH3g1389 | 316 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 165 | 216 | IPR017930 | - | |
HCH3g1389 | 316 | MobiDBLite | consensus disorder prediction | 220 | 244 | - | - | |
HCH3g1389 | 316 | MobiDBLite | consensus disorder prediction | 92 | 117 | - | - | |
HCH3g1389 | 316 | FunFam | Two-component response regulator | 156 | 219 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g1389 | HCH-Chr3:51872592 | HCH9g0976 | HCH-Chr9:7294860 | 2.30E-33 | dispersed | |
HCH2g1065 | HCH-Chr2:53664572 | HCH3g1389 | HCH-Chr3:51872592 | 1.10E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33383 | PF00249 | Myb_DNA-binding | 1.30E-08 | CL0123 | HCH | TF |
Pathway information
