Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1399 ATGGCGGAGATTTGCTGTAAAGTTATGAGCGAGAGTGAAGGTGCTACGTCATCTTGTGAGCCAAGTTCAAGGGTGGCGAGACGGCGTAGGATAGAGATTAGACGGTGTAAATTTGTTACCGGAGTTGGAGTGTCCCAGTTGTCGGAAACGGAAACTGTGTCTAAGAGACAGAAAGTTGAAGATCGTAAAATGTCGACGCCACCGGCGACGGTTTCTCGGGACTGTGAGAACGCAGTAGAGAATTGTGGTGAAGCAAAAGAGGAAAGTGGTGGAGTTTTTGAGAGATTCGGGAACGGAGAAAGTAAGAAAGAGATTTTGATATCAAGGCAGCCATCGGTTCTTTCTACTCGACTTTCGATCGCTTCGATGGAATCTTCGAGTTTCCGTGAAGAGATTCCGAAGTTTGGATTAGCTTCTGTTTGTGGACGGAGGAGAGATATGGAAGATGCCGTCGCAGTTCATACATCATTATCTTCTACTAAGAAGCTGCACTATTTTGGTGTTTTTGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGTAAGGAGAGGATGCATGAGCTTGTGAAAGAAGAGACGGCGAGGGAAGAGGATGTTACGGCGGAGGAGGCGGCGGCGGCTGGCGGGTGGGATGGCGCGATGAAGAGAATATTTAATCAGATGGATAAGGAAGTGGAGGCGCGAAATAACGATGAGGGTCTAGTTGCTAATTGTAGATGTGAATTTCAGTCGCCTGATTGTGATGCCGTTGGATCCACTGCCGTTGTCGCAGTCGTGACACCGGATAAGATAATCGTCGCCAACTGCGGCGATTCGAGAGCGGTTCTTTGCCGGGGTGGCAAAGCTATACCTCTCTCGTCCGATCATAAGCCGGATCGTCCAGATGAGCTCCAGCGGATCGAGGATGCCGGCGGCCGAGTCATTTATTGGGACGGCCCGAGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTGAAACCGTTCGTGATATGTGAGCCGGAGGTGACAATAACAGATCGGACGGCGGAGGATGAGTGTTTGATTCTGGCGAGCGACGGCCTTTGGGACGTGGTGCCGAACGACACGGCGTGTGGGGTGGCGAGTATGTGTTTACGGGGAAAGGGTGAAGGGGGGTCGCCGGGGTCTCCTCCGGCGAGCGGCGGCCGCGGCGGTAACAAAGCATGTAGTGATGCATCGATGCTACTCACCAAGCTGGCTTTGGCAAGGCATAGTACGGACAACGTGAGCGTGGTCGTGGTGGACCTTAAGAGGGACACGTAG 1296 52.16 MAEICCKVMSESEGATSSCEPSSRVARRRRIEIRRCKFVTGVGVSQLSETETVSKRQKVEDRKMSTPPATVSRDCENAVENCGEAKEESGGVFERFGNGESKKEILISRQPSVLSTRLSIASMESSSFREEIPKFGLASVCGRRRDMEDAVAVHTSLSSTKKLHYFGVFDGHGCSHVAMRCKERMHELVKEETAREEDVTAEEAAAAGGWDGAMKRIFNQMDKEVEARNNDEGLVANCRCEFQSPDCDAVGSTAVVAVVTPDKIIVANCGDSRAVLCRGGKAIPLSSDHKPDRPDELQRIEDAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPFVICEPEVTITDRTAEDECLILASDGLWDVVPNDTACGVASMCLRGKGEGGSPGSPPASGGRGGNKACSDASMLLTKLALARHSTDNVSVVVVDLKRDT 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51941522 51943093 - evm.model.ptg000005l.118 HCH3g1399 542127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1399 431 ProSiteProfiles PPM-type phosphatase domain profile. 134 427 IPR001932 -
HCH3g1399 431 SMART PP2C_4 124 425 IPR001932 -
HCH3g1399 431 MobiDBLite consensus disorder prediction 51 72 - -
HCH3g1399 431 PANTHER PROTEIN PHOSPHATASE 99 426 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
HCH3g1399 431 ProSitePatterns PPM-type phosphatase domain signature. 165 173 IPR000222 GO:0043169(InterPro)
HCH3g1399 431 SUPERFAMILY PP2C-like 126 428 IPR036457 -
HCH3g1399 431 FunFam Protein phosphatase 2C 50 111 431 - -
HCH3g1399 431 Pfam Protein phosphatase 2C 135 420 IPR001932 -
HCH3g1399 431 CDD PP2Cc 134 427 IPR001932 -
HCH3g1399 431 Gene3D - 129 431 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1399 HCH-Chr3:51941522 HCH4g0520 HCH-Chr4:3411272 1.40E-62 dispersed
HCH11g1169 HCH-Chr11:43866811 HCH3g1399 HCH-Chr3:51941522 1.30E-76 transposed
HCH13g0506 HCH-Chr13:3551931 HCH3g1399 HCH-Chr3:51941522 2.10E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1399 K14497 - csv:101206871 541.576