Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH3g1401 ATGGGGGAAGAAGAGGAACTACCCATTCTGAGAATAGAACATGGGCATGAAAGTTCGATGCCCGTATTTGCCACAAAGGTAAATTGTTGCAGTCCCAACTGTGTTTTTTCCAGACAGAACAACAGTAATCTGGAATCAGTACAACGTTCGAAATCAGCAAGGAAGCTCTGTGGTTTAATATTATTCTATATTATAGCTGTAGTAGTAGAGATTGTTGGTGGTGTTAGAGCCAACAGTCTTGCAATAATGACAGATGCAGCTCACTTGATGAGTGATGTTGCTGGTTTCGCTATATCTCTCTTCTCAGTATGGGTTTCAGGCTGGGAGGCGACATCACAACACTCTTTCGGATACAATCGTCTCGAAGTTTTGGGCGCCCTTGTGTCTGTACAGCTTATTTGGCTGATTTCTGGGATATTAATCTATGAAGCAGTTGACCGGCTTCTTAACCAAAAGGGAATGGTGAATGGAAAGCTTATGTTTGCAGTTGCAGCATTTGGGTTTATACTCAACTTATTTATGGTCATATGGCTTGGCCATAGCCACTCTCACCAACCTTATAGTCATTCTCATTGCTCTCATCATAATGATCACTCTCATCAGAATCATGAGCATGAGCATGAGCATGAGCACGAGCACGAGAAAGAGGAATTATGTGCACTAACCATAGAAGAGGGGGCTGTTTTGGAGTCAACTTATATAGAAAAGAAAAAAATATGGAACATAAATCTCCAAGGAGCTTATCTTCATGTCATGACCGATATGATCCAGTCTGTCGGGGTGATGATTGCTGGAGCTGTGCTATGGGTAAAACCCGATTTGTTCATGGTTGATTTGATCTGCACTCTTCTATTTTCTGTTCTTGCTGTAAGTACCACTTTCTCTATGGTTAGAAATGTAATTGGCATATTGATGGAAAGAATTCCTAGGGAGATCAATGTTGAGAGTTTAGAAAAAGATCTCAAGGACATAAAAGGAGTTCATGATATGTACGACTTGCATGTTTGGTCCATAACGGTTGGAAAAGTTGTGTTGTCTTGCCATGTTATAGCCGAGCCTGGAGTTTGTTCTAGGGAACTGATTTCTAAGATTAGGGATGTTTGTGAAAAGAGATACGATATATTTCATGTAACTGTACAAGTTGAATAA 1149 40.38 MGEEEELPILRIEHGHESSMPVFATKVNCCSPNCVFSRQNNSNLESVQRSKSARKLCGLILFYIIAVVVEIVGGVRANSLAIMTDAAHLMSDVAGFAISLFSVWVSGWEATSQHSFGYNRLEVLGALVSVQLIWLISGILIYEAVDRLLNQKGMVNGKLMFAVAAFGFILNLFMVIWLGHSHSHQPYSHSHCSHHNDHSHQNHEHEHEHEHEHEKEELCALTIEEGAVLESTYIEKKKIWNINLQGAYLHVMTDMIQSVGVMIAGAVLWVKPDLFMVDLICTLLFSVLAVSTTFSMVRNVIGILMERIPREINVESLEKDLKDIKGVHDMYDLHVWSITVGKVVLSCHVIAEPGVCSRELISKIRDVCEKRYDIFHVTVQVE 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 51956714 51957862 + evm.model.ptg000005l.116 HCH3g1401 542129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH3g1401 382 Gene3D Cation efflux protein transmembrane domain 52 304 IPR027469 -
HCH3g1401 382 NCBIfam cation diffusion facilitator family transporter 54 382 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1401 382 Pfam Cation efflux family 60 305 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH3g1401 382 MobiDBLite consensus disorder prediction 189 214 - -
HCH3g1401 382 SUPERFAMILY Cation efflux protein transmembrane domain-like 51 306 IPR027469 -
HCH3g1401 382 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 311 382 IPR036837 -
HCH3g1401 382 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 27 382 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
HCH3g1401 382 MobiDBLite consensus disorder prediction 190 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g1401 HCH-Chr3:51956714 HCH5g0615 HCH-Chr5:4331461 1.00E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH3g1401 K14689 - csv:116403740 478.404