Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH3g1432 | ATGGCAGATTCTCTCTCTTACTTCCTTTTCCTCTCTGCTACCATCCTATCTTATCTCTGTTGGTTTCATTTTCTTTCTCGCAAACTCACCGGCCCTAAAGTATGGCCAATAATCGGCAGCCTTCCTTCTCTCTTCTATAACCGTAACCGAATGCATGATTGGATCGCCGCTAACCTCCGCGCCACCGGTGGCTCCGCCACCTACCAAACATGTACGGTAGCGCTTCCATATTTTGCATGGAAACAAGGGTTTTATACAGTCACTTGTCACCCGAAAAACCTCGAACATATTCTTCGAACCCGGTTCGATAATTATCCGAAAGGACCGGAATGGCAAGCAGCATTTCATGATCTTCTAGGGCAAGGGATATTCAATAGTGATGGTGAAACTTGGCTCATTCAAAGGAAGACGGCAGCGTTAGAGTTTACGGCGAGGACTCTCCGGCAAGCGATGGATCGGTGGGTGAATGGGACGATAAGGAAACGATTATGGTGTATTTTAGATAAGGCAGTGGAGTATGAGAGTGAAGTTGATTTGCAAGACTTGTTGCTTAGGTTAACTTTTGATAATATTTGTGGTCTCACGTTTGGAAAAGATCCTGAAACTCTCTCCCCGGATTTACCTGCAAATCCCTTTTCCATGGCCTTCGATACTGCCACTGAAGCTACATTGCAGCGAGTACTCTATCCTGGTTTCTTATGGAGGATAGAGAAATTTCTCGGCATCGGAACGGAGAGAAAGTTGAAGAAATGTCTGGAAGTAGTAGAAATTTACATGAACGACGCCATTGCAGCACGGAAAGAATCTCCCTCCGATGACTTACTCTCTCGCTTCATGAAAAAACGCGACGTCGACGGCAACCGCTTTCCGACGAAAGTCCTTCAACGCATTGCTTTAAACTTCGTCCTCGCCGGCCGTGACACGTCATCAGTAGCCCTAAGCTGGTTCTTCTGGCTAGTAATGAACCATCCGCACATCGAGGATAAAATCGTCAGCGAAATCTCAAAAGTTCTTCGAGAAACTCGCGGCGACGATCACCGGAAATGGATAGAAGAGCCATTAGTATTCGACGAAGCCGATAAACTCGTCTTTCTAAAAGCCGCGTTAGCCGAAACGCTGCGTTTATATCCGTCGGTACCAGAGGATTCAAAGTACGTAATTTCCGACGATGTTTTGCCGGACGGAACTTTCGTTCCGGCCGGTTCGACGGTTACGTATTCGATATATTCGGTTGGGAGAATGAAGAGTATTTGGGGTGAGGATTGTTTGGAATTTAAACCGGAGCGGTGGTTATCGGTCGAGGGAGACCGGTTTGAACCGCCGAAAGAGGGGTTTAAATTTGTAGCGTTTAATGGTGGACCGAGGACTTGTTTGGGGAAGGATTTGGCATACTTGCAAATGAAGTCAGTGGCTTCCGCCGTGCTTTTACGGTACCGGCTTTATCCGGTTCCCGGTCACCGGGTAGAGCAGAAGATATCTCTAACTCTTTTCATGAAGAATGGACTCAGAGTTTTCTTGCGTCCTCGTAAACTTGGCAATGAAAATGGCGGTTTAGCTAGCTCCGGTTAG | 1569 | 46.97 | MADSLSYFLFLSATILSYLCWFHFLSRKLTGPKVWPIIGSLPSLFYNRNRMHDWIAANLRATGGSATYQTCTVALPYFAWKQGFYTVTCHPKNLEHILRTRFDNYPKGPEWQAAFHDLLGQGIFNSDGETWLIQRKTAALEFTARTLRQAMDRWVNGTIRKRLWCILDKAVEYESEVDLQDLLLRLTFDNICGLTFGKDPETLSPDLPANPFSMAFDTATEATLQRVLYPGFLWRIEKFLGIGTERKLKKCLEVVEIYMNDAIAARKESPSDDLLSRFMKKRDVDGNRFPTKVLQRIALNFVLAGRDTSSVALSWFFWLVMNHPHIEDKIVSEISKVLRETRGDDHRKWIEEPLVFDEADKLVFLKAALAETLRLYPSVPEDSKYVISDDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCLEFKPERWLSVEGDRFEPPKEGFKFVAFNGGPRTCLGKDLAYLQMKSVASAVLLRYRLYPVPGHRVEQKISLTLFMKNGLRVFLRPRKLGNENGGLASSG | 522 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 52232360 | 52234455 | + | evm.model.ptg000005l.85 | HCH3g1432 | 542160 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH3g1432 | 522 | PANTHER | CYTOCHROME P450 | 20 | 502 | - | - | |
| HCH3g1432 | 522 | SUPERFAMILY | Cytochrome P450 | 22 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | Pfam | Cytochrome P450 | 85 | 495 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | Gene3D | Cytochrome P450 | 25 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | P450 superfamily signature | 448 | 457 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | P450 superfamily signature | 457 | 468 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | P450 superfamily signature | 304 | 321 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | P450 superfamily signature | 367 | 378 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | CDD | CYP86A | 71 | 502 | - | - | |
| HCH3g1432 | 522 | PRINTS | E-class P450 group I signature | 366 | 384 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | E-class P450 group I signature | 447 | 457 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | E-class P450 group I signature | 457 | 480 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | E-class P450 group I signature | 293 | 310 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | PRINTS | E-class P450 group I signature | 313 | 339 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH3g1432 | 522 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 450 | 459 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH3g1432 | 522 | FunFam | Cytochrome P450 | 23 | 512 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH13g1126 | HCH-Chr13:37095798 | HCH3g1432 | HCH-Chr3:52232360 | 2.50E-189 | dispersed | |
| HCH3g1432 | HCH-Chr3:52232360 | HCH4g1139 | HCH-Chr4:7470329 | 1.70E-121 | dispersed | |
| HCH3g1432 | HCH-Chr3:52232360 | HCH5g0522 | HCH-Chr5:3564107 | 1.40E-192 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH3g1432 | K15401 | - | csv:101214516 | 874.774 |